VIR 37 - Novgorod-Seversky - cv
SRR 14708234
General Information
- Sample Name
- UNS
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
PHL-2 | c.1540A>G | p.Thr514Ala | missense variant | moderate | contig2621 | 340818 | A/G | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3379C>G | p.His1127Asp | missense variant | moderate | contig2621 | 343422 | C/G |
|
PHL-2 | c.3380A>G | p.His1127Arg | missense variant | moderate | contig2621 | 343423 | A/G |
|
PHL-2 | c.3381T>A | p.His1127Gln | missense variant | moderate | contig2621 | 343424 | T/A |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
AAE1-2 | c.205T>A | p.Ser69Thr | missense variant | moderate | contig81 | 209167 | T/A |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.2027A>T | p.Gln676Leu | missense variant | moderate | contig1460 | 1190013 | T/A | |
FT | c.175C>G | p.Leu59Val | missense variant | moderate | contig1561 | 3124599 | C/G |
|
FT |
c.276_277ins |
p.Met93fs | frameshift variant & splice region variant | high | contig1561 | 3125016 |
T/TAGGTTTCCC |
|
FT | c.278+1G>T | splice donor variant & intron variant | high | contig1561 | 3125020 | G/T |
|
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
FLD | c.2831A>G | p.Glu944Gly | missense variant | moderate | contig1450 | 2044201 | T/C |
|
AAE1-3 | c.655C>T | p.Pro219Ser | missense variant | moderate | contig976 | 1083199 | G/A |
|
AAE1-3 | c.635G>A | p.Gly212Asp | missense variant | moderate | contig976 | 1083219 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.12G>A | p.Met4Ile | missense variant | moderate | contig976 | 1084063 | C/T |
|
AAE1-3 | c.11T>C | p.Met4Thr | missense variant | moderate | contig976 | 1084064 | A/G |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.153 Lift (RSP11378)
- 0.154 Electra (RSP11366)
- 0.163 Badger (RSP11614)
- 0.164 Serious Happiness (RSP10763)
- 0.167 Durban Poison 1 (RSP10996)
- 0.167 Durban Poison 1 (RSP11013)
- 0.172 Doug s Varin (RSP11243)
- 0.177 Miss X (RSP10999)
- 0.182 VIR 469 (SRR14708242)
- 0.183 Super Blue Dream (RSP11011)
- 0.183 AOAC MI 508 (RSP11750)
- 0.183 Tygra (RSP10667)
- 0.184 Rest (RSP11377)
- 0.185 VIR 483 (SRR14708239)
- 0.188 Kompolti (SRR14708277)
- 0.189 Blueberry Cheesecake (RSP10684)
- 0.189 AOAC MI 545 (RSP11756)
- 0.190 Blue Dream (RSP11010)
- 0.191 Blue Dream (RSP11006)
- 0.192 VIR 469 (SRR14708243)
Nearest genetic relatives (Base Tree)
- 0.200 Tisza (RSP11044)
- 0.221 Blueberry Cheesecake (RSP10684)
- 0.222 Liberty Haze (RSP11000)
- 0.236 Recon (RSP10755)
- 0.237 Tygra (RSP10667)
- 0.245 Santhica27 (RSP11047)
- 0.250 Tisza (RSP10659)
- 0.250 Hermaphrodite ResearchSample2 (RSP11050)
- 0.252 Carmagnola (RSP11037)
- 0.253 Cbot-2019-006 (RSP11134)
- 0.253 Lovrin (RSP10658)
- 0.261 Durban Poison (RSP11014)
- 0.262 Golden Goat 2 (RSP10991)
- 0.263 Kimbo Slice (RSP10997)
- 0.271 QUEEN JESUS (RSP10105)
- 0.274 RKM-2018-019 (RSP11111)
- 0.274 RKM-2018-009 (RSP11100)
- 0.275 UP Sunrise (RSP10989)
- 0.275 RKM-2018-005 (RSP11096)
- 0.276 RKM-2018-031 (RSP11123)
Most genetically distant strains (All Samples)
- 0.445 JL 4th Gen 5 (RSP11199)
- 0.436 JL yellow (RSP11075)
- 0.419 JL 3rd Gen Mother (RSP11214)
- 0.397 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.396 Northern Lights (RSP11501)
- 0.394 JL 2 (RSP11076)
- 0.386 JL 4th Gen 6 (RSP11200)
- 0.381 JL 3rd Gen Mother (RSP11197)
- 0.381 JL 4th Gen 1 (RSP11193)
- 0.375 JL 4th Gen 4 (RSP11198)
- 0.374 Star Dawg (RSP11352)
- 0.367 Tanao Sri-white 80 (RSP11621)
- 0.364 JL 3rd Gen Father (RSP11196)
- 0.362 Red Eye OG (RSP11190)
- 0.362 Right Mark (RSP11628)
- 0.359 UP Sunset (RSP11256)
- 0.354 Tanao Sri-white 79 (RSP11620)
- 0.353 Gorilla Glue (RSP11493)
- 0.353 Tanao Sri 46 (RSP11486)
- 0.353 Skunk 18 (RSP11038)
Most genetically distant strains (Base Tree)
- 0.455 JL yellow (RSP11075)
- 0.375 RKM-2018-002 (RSP11093)
- 0.366 Cbot-2019-004 (RSP11132)
- 0.359 RKM-2018-003 (RSP11094)
- 0.349 Skywalker OG (RSP10837)
- 0.347 RKM-2018-026 (RSP11118)
- 0.347 Monoica (RSP10241)
- 0.345 RKM-2018-034 (RSP11126)
- 0.343 Skunk 18 (RSP11038)
- 0.341 RKM-2018-029 (RSP11121)
- 0.338 Black Beauty (RSP11035)
- 0.336 RKM-2018-018 (RSP11110)
- 0.333 The Gift (RSP10988)
- 0.329 Blueberry Cheesecake (RSP10672)
- 0.328 Pie Hoe (RSP11073)
- 0.328 CST (RSP11002)
- 0.326 RKM-2018-023 (RSP11115)
- 0.326 Sour Raspberry (RSP10551)
- 0.322 Cbot-2019-005 (RSP11133)
- 0.321 KYRG-11 (RSP11051)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 13
- Concordance:
- 11
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2