R1in136
SRR 14708237
General Information
- Sample Name
- ERM1
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
AAE1-1 | c.1427T>C | p.Ile476Thr | missense variant | moderate | contig606 | 3242844 | A/G |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
TFL1 | c.304G>A | p.Asp102Asn | missense variant & splice region variant | moderate | contig1636 | 520613 | C/T |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
AAE1-3 | c.635G>A | p.Gly212Asp | missense variant | moderate | contig976 | 1083219 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.102 AOAC MI 535 (RSP11754)
- 0.107 B52 (SRR14708255)
- 0.109 AOAC MI 501 (RSP11748)
- 0.110 AOAC MI 545 (RSP11756)
- 0.114 AOAC MI 542 (RSP11755)
- 0.118 VIR 493, Glukhovskaja 10 Zheltostebel'naja (SRR14708230)
- 0.119 AOAC MI 533 (RSP11753)
- 0.121 AOAC MI 569 (RSP11759)
- 0.123 AOAC MI 504 (RSP11749)
- 0.123 AOAC MI 597 (RSP11761)
- 0.127 AOAC MI 588 (RSP11760)
- 0.127 AOAC MI 508 (RSP11750)
- 0.129 AOAC MI 599 (RSP11762)
- 0.132 AOAC MI 567 (RSP11758)
- 0.136 Lift (RSP11378)
- 0.138 AOAC MI 548 (RSP11757)
- 0.140 AOAC MI 532 (RSP11752)
- 0.140 XUM2 (SRR14708204)
- 0.141 Domnesia (RSP11184)
- 0.143 Serious Happiness (RSP10763)
Nearest genetic relatives (Base Tree)
- 0.206 Fedora 17 (RSP10661)
- 0.211 Tygra (RSP10667)
- 0.213 Santhica27 (RSP11047)
- 0.213 Futura 75 (RSP10664)
- 0.214 Kyrgyz Gold (RSP11054)
- 0.219 Lovrin (RSP10658)
- 0.225 Blueberry Cheesecake (RSP10684)
- 0.228 Kimbo Slice (RSP10997)
- 0.230 Monoica (RSP10241)
- 0.230 USO 31 (RSP10981)
- 0.231 RKM-2018-029 (RSP11121)
- 0.233 UP Sunrise (RSP10989)
- 0.238 Liberty Haze (RSP11000)
- 0.243 Recon (RSP10755)
- 0.244 KYRG-11 (RSP11051)
- 0.245 Ivory (RSP10668)
- 0.247 RKM-2018-005 (RSP11096)
- 0.250 Jiangji (RSP10653)
- 0.253 Tisza (RSP11044)
- 0.253 Pie Hoe (RSP11073)
Most genetically distant strains (All Samples)
- 0.410 JL yellow (RSP11075)
- 0.409 JL 4th Gen 5 (RSP11199)
- 0.381 80E (RSP11213)
- 0.379 JL 4th Gen 4 (RSP11198)
- 0.371 Sour Tsunami (RSP11187)
- 0.368 JL 3rd Gen Mother (RSP11197)
- 0.361 Northern Lights (RSP11501)
- 0.356 JL 3rd Gen Mother (RSP11214)
- 0.351 Sour Raspberry (RSP10551)
- 0.348 Gold Cracker (RSP11041)
- 0.348 Feral (RSP11205)
- 0.346 80E (RSP11211)
- 0.346 JL 3rd Gen Father (RSP11196)
- 0.344 JL 4th Gen 1 (RSP11193)
- 0.344 IBE (SRR14708228)
- 0.344 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.343 Tanao Sri 46 (RSP11486)
- 0.342 Tiger Tail 30 (RSP11484)
- 0.340 Candy Kush (RSP11492)
- 0.339 JL 4th Gen 3 (RSP11195)
Most genetically distant strains (Base Tree)
- 0.401 JL yellow (RSP11075)
- 0.355 RKM-2018-002 (RSP11093)
- 0.351 Sour Raspberry (RSP10551)
- 0.351 RKM-2018-003 (RSP11094)
- 0.341 RKM-2018-027 (RSP11119)
- 0.331 Blueberry Cheesecake (RSP10672)
- 0.330 Skunk 18 (RSP11038)
- 0.330 The Gift (RSP10988)
- 0.329 Cbot-2019-004 (RSP11132)
- 0.324 CST (RSP11002)
- 0.321 RKM-2018-006 (RSP11097)
- 0.321 Cherry (RSP11142)
- 0.319 RKM-2018-028 (RSP11120)
- 0.318 Black Beauty (RSP11035)
- 0.316 QUEEN JESUS (RSP10105)
- 0.310 RKM-2018-019 (RSP11111)
- 0.310 RKM-2018-031 (RSP11123)
- 0.308 Cbot-2019-006 (RSP11134)
- 0.307 Cbot-2019-005 (RSP11133)
- 0.307 RKM-2018-034 (RSP11126)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 6
- Concordance:
- 6
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2