Advanced Strain Search

R1in136

SRR 14708237

Grower: Lanzhou University, Guangpeng Ren

General Information

Sample Name
ERM1
Accession Date
May 31, 2021
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.35%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0225
male female SRR14708237

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
CBDAS c.503A>G p.Asn168Ser missense variant moderate contig1772 2082729

IGV: Start, Jump

A/G
NGS:
0.024
C90:
0.062
CBDAS c.1628G>A p.Arg543His missense variant moderate contig1772 2083854

IGV: Start, Jump

G/A
NGS:
0.033
C90:
0.000

Variants (Select Genes of Interest)
GPPs1

UniProt

c.896A>G p.Asn299Ser missense variant moderate contig676 169772

IGV: Start, Jump

A/G
NGS:
0.046
C90:
0.000
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
AAE1-1

UniProt

c.1427T>C p.Ile476Thr missense variant moderate contig606 3242844

IGV: Start, Jump

A/G
NGS:
0.000
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
AAE1-2

UniProt

c.331A>G p.Asn111Asp missense variant moderate contig81 209293

IGV: Start, Jump

A/G
NGS:
0.123
C90:
0.000
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.116
C90:
0.000
AAE1-2

UniProt

c.1415G>A p.Ser472Asn missense variant moderate contig81 210377

IGV: Start, Jump

G/A
NGS:
0.070
C90:
0.000
AAE1-2

UniProt

c.1417A>G p.Thr473Ala missense variant moderate contig81 210379

IGV: Start, Jump

A/G
NGS:
0.070
C90:
0.000
AAE1-2

UniProt

c.1434G>T p.Glu478Asp missense variant moderate contig81 210396

IGV: Start, Jump

G/T
NGS:
0.075
C90:
0.000
TFL1

UniProt

c.304G>A p.Asp102Asn missense variant & splice region variant moderate contig1636 520613

IGV: Start, Jump

C/T
NGS:
0.024
C90:
0.000
TFL1

UniProt

c.302-1G>A splice acceptor variant & intron variant high contig1636 520616

IGV: Start, Jump

C/T
NGS:
0.103
C90:
0.794
EMF2

UniProt

c.722C>T p.Thr241Ile missense variant moderate contig954 3050302

IGV: Start, Jump

C/T
NGS:
0.018
C90:
0.062
EMF2

UniProt

c.1315G>C p.Ala439Pro missense variant moderate contig954 3055804

IGV: Start, Jump

G/C
NGS:
0.015
C90:
0.053
EMF2

UniProt

c.1772A>G p.Gln591Arg missense variant moderate contig954 3059929

IGV: Start, Jump

A/G
NGS:
0.092
C90:
0.876
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.198A>C p.Lys66Asn missense variant moderate contig121 2828854

IGV: Start, Jump

A/C
NGS:
0.044
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
FLD

UniProt

c.2686G>A p.Ala896Thr missense variant moderate contig1450 2044848

IGV: Start, Jump

C/T
NGS:
0.035
C90:
0.225
FLD

UniProt

c.2681T>C p.Ile894Thr missense variant moderate contig1450 2044853

IGV: Start, Jump

A/G
NGS:
0.020
C90:
0.144
AAE1-3

UniProt

c.635G>A p.Gly212Asp missense variant moderate contig976 1083219

IGV: Start, Jump

C/T
NGS:
0.007
C90:
0.000
AAE1-3

UniProt

c.634G>C p.Gly212Arg missense variant moderate contig976 1083220

IGV: Start, Jump

C/G
NGS:
0.116
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.042 0.083 0.125 0.167
clone distance sibling distance more distant
  1. 0.102 AOAC MI 535 (RSP11754)
  2. 0.107 B52 (SRR14708255)
  3. 0.109 AOAC MI 501 (RSP11748)
  4. 0.110 AOAC MI 545 (RSP11756)
  5. 0.114 AOAC MI 542 (RSP11755)
  6. 0.118 VIR 493, Glukhovskaja 10 Zheltostebel'naja (SRR14708230)
  7. 0.119 AOAC MI 533 (RSP11753)
  8. 0.121 AOAC MI 569 (RSP11759)
  9. 0.123 AOAC MI 504 (RSP11749)
  10. 0.123 AOAC MI 597 (RSP11761)
  11. 0.127 AOAC MI 588 (RSP11760)
  12. 0.127 AOAC MI 508 (RSP11750)
  13. 0.129 AOAC MI 599 (RSP11762)
  14. 0.132 AOAC MI 567 (RSP11758)
  15. 0.136 Lift (RSP11378)
  16. 0.138 AOAC MI 548 (RSP11757)
  17. 0.140 AOAC MI 532 (RSP11752)
  18. 0.140 XUM2 (SRR14708204)
  19. 0.141 Domnesia (RSP11184)
  20. 0.143 Serious Happiness (RSP10763)

Nearest genetic relatives (Base Tree)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.206 Fedora 17 (RSP10661)
  2. 0.211 Tygra (RSP10667)
  3. 0.213 Santhica27 (RSP11047)
  4. 0.213 Futura 75 (RSP10664)
  5. 0.214 Kyrgyz Gold (RSP11054)
  6. 0.219 Lovrin (RSP10658)
  7. 0.225 Blueberry Cheesecake (RSP10684)
  8. 0.228 Kimbo Slice (RSP10997)
  9. 0.230 Monoica (RSP10241)
  10. 0.230 USO 31 (RSP10981)
  11. 0.231 RKM-2018-029 (RSP11121)
  12. 0.233 UP Sunrise (RSP10989)
  13. 0.238 Liberty Haze (RSP11000)
  14. 0.243 Recon (RSP10755)
  15. 0.244 KYRG-11 (RSP11051)
  16. 0.245 Ivory (RSP10668)
  17. 0.247 RKM-2018-005 (RSP11096)
  18. 0.250 Jiangji (RSP10653)
  19. 0.253 Tisza (RSP11044)
  20. 0.253 Pie Hoe (RSP11073)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.410 JL yellow (RSP11075)
  2. 0.409 JL 4th Gen 5 (RSP11199)
  3. 0.381 80E (RSP11213)
  4. 0.379 JL 4th Gen 4 (RSP11198)
  5. 0.371 Sour Tsunami (RSP11187)
  6. 0.368 JL 3rd Gen Mother (RSP11197)
  7. 0.361 Northern Lights (RSP11501)
  8. 0.356 JL 3rd Gen Mother (RSP11214)
  9. 0.351 Sour Raspberry (RSP10551)
  10. 0.348 Gold Cracker (RSP11041)
  11. 0.348 Feral (RSP11205)
  12. 0.346 80E (RSP11211)
  13. 0.346 JL 3rd Gen Father (RSP11196)
  14. 0.344 JL 4th Gen 1 (RSP11193)
  15. 0.344 IBE (SRR14708228)
  16. 0.344 Chematonic Cannatonic x Chemdawg (RSP11394)
  17. 0.343 Tanao Sri 46 (RSP11486)
  18. 0.342 Tiger Tail 30 (RSP11484)
  19. 0.340 Candy Kush (RSP11492)
  20. 0.339 JL 4th Gen 3 (RSP11195)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.401 JL yellow (RSP11075)
  2. 0.355 RKM-2018-002 (RSP11093)
  3. 0.351 Sour Raspberry (RSP10551)
  4. 0.351 RKM-2018-003 (RSP11094)
  5. 0.341 RKM-2018-027 (RSP11119)
  6. 0.331 Blueberry Cheesecake (RSP10672)
  7. 0.330 Skunk 18 (RSP11038)
  8. 0.330 The Gift (RSP10988)
  9. 0.329 Cbot-2019-004 (RSP11132)
  10. 0.324 CST (RSP11002)
  11. 0.321 RKM-2018-006 (RSP11097)
  12. 0.321 Cherry (RSP11142)
  13. 0.319 RKM-2018-028 (RSP11120)
  14. 0.318 Black Beauty (RSP11035)
  15. 0.316 QUEEN JESUS (RSP10105)
  16. 0.310 RKM-2018-019 (RSP11111)
  17. 0.310 RKM-2018-031 (RSP11123)
  18. 0.308 Cbot-2019-006 (RSP11134)
  19. 0.307 Cbot-2019-005 (RSP11133)
  20. 0.307 RKM-2018-034 (RSP11126)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346672
Overlapping SNPs:
6
Concordance:
6

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495179
Overlapping SNPs:
2
Concordance:
2
QR code for SRR14708237

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