VIR 483
SRR 14708238
General Information
- Sample Name
- UTT3
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PKSG-4a |
c.49_50insTG |
p.Glu16_Gly1 |
disruptive inframe insertion | moderate | contig700 | 1936744 | A/AGGT |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.110 Lift (RSP11378)
- 0.112 AOAC MI 542 (RSP11755)
- 0.116 AOAC MI 597 (RSP11761)
- 0.118 Durban Poison 1 (RSP11013)
- 0.121 AOAC MI 588 (RSP11760)
- 0.123 AOAC MI 508 (RSP11750)
- 0.127 AOAC MI 545 (RSP11756)
- 0.127 AOAC MI 569 (RSP11759)
- 0.127 AOAC MI 535 (RSP11754)
- 0.129 Doug s Varin (RSP11243)
- 0.129 AOAC MI 532 (RSP11752)
- 0.129 AOAC MI 599 (RSP11762)
- 0.132 AOAC MI 501 (RSP11748)
- 0.132 AOAC MI 504 (RSP11749)
- 0.132 AOAC MI 533 (RSP11753)
- 0.133 Kompolti (SRR14708277)
- 0.134 Badger (RSP11614)
- 0.135 Durban Poison 1 (RSP10996)
- 0.138 Electra (RSP11366)
- 0.138 AOAC MI 548 (RSP11757)
Nearest genetic relatives (Base Tree)
- 0.157 CST (RSP11002)
- 0.179 Durban Poison (RSP11014)
- 0.188 RKM-2018-019 (RSP11111)
- 0.194 Carmagnola (RSP10979)
- 0.196 Golden Goat 2 (RSP10991)
- 0.200 KYRG-11 (RSP11051)
- 0.204 Hermaphrodite ResearchSample2 (RSP11050)
- 0.206 Cbot-2019-001 (RSP11129)
- 0.207 RKM-2018-031 (RSP11123)
- 0.216 Recon (RSP10755)
- 0.221 Kyrgyz Gold (RSP11054)
- 0.221 RKM-2018-029 (RSP11121)
- 0.224 Blueberry Cheesecake (RSP10684)
- 0.227 Tygra (RSP10667)
- 0.229 Liberty Haze (RSP11000)
- 0.229 UP Sunrise (RSP10989)
- 0.231 Carmagnola (RSP11037)
- 0.233 Tisza (RSP10659)
- 0.238 Pie Hoe (RSP11073)
- 0.245 RKM-2018-026 (RSP11118)
Most genetically distant strains (All Samples)
- 0.402 JL 4th Gen 4 (RSP11198)
- 0.400 JL 4th Gen 5 (RSP11199)
- 0.394 JL 4th Gen 6 (RSP11200)
- 0.388 JL yellow (RSP11075)
- 0.381 Chem 91 (RSP11185)
- 0.375 IUP3 (SRR14708256)
- 0.364 80E (RSP11213)
- 0.361 Feral (RSP11205)
- 0.357 JL 3rd Gen Mother (RSP11214)
- 0.357 JL 4th Gen 1 (RSP11193)
- 0.356 JL 3rd Gen Mother (RSP11197)
- 0.355 Squirrel Tail 81 (RSP11622)
- 0.353 Danny Noonan (RSP11070)
- 0.348 Sour Tsunami x Cataract Ku (RSP11183)
- 0.347 JL 4th Gen 2 (RSP11194)
- 0.347 JL 2 (RSP11076)
- 0.345 JL 3rd Gen Father (RSP11196)
- 0.339 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.337 AVIDEKEL 2 0 (RSP11174)
- 0.333 Northern Lights (RSP11501)
Most genetically distant strains (Base Tree)
- 0.361 RKM-2018-002 (RSP11093)
- 0.361 JL yellow (RSP11075)
- 0.329 Ivory (RSP10668)
- 0.329 Skunk 18 (RSP11038)
- 0.319 RKM-2018-033 (RSP11125)
- 0.313 Blue Dream (RSP11033)
- 0.310 Kush Hemp E1 (RSP11128)
- 0.308 USO 31 (RSP10981)
- 0.305 Cherry (RSP11142)
- 0.303 RKM-2018-018 (RSP11110)
- 0.296 Fedora 17 (RSP10661)
- 0.293 RKM-2018-027 (RSP11119)
- 0.292 The Gift (RSP10988)
- 0.290 Skywalker OG (RSP10837)
- 0.289 Futura 75 (RSP10664)
- 0.289 Cbot-2019-005 (RSP11133)
- 0.289 Jiangji (RSP10653)
- 0.287 RKM-2018-006 (RSP11097)
- 0.286 RKM-2018-028 (RSP11120)
- 0.285 RKM-2018-005 (RSP11096)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 6
- Concordance:
- 6
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2