VIR 483
SRR 14708239
General Information
- Sample Name
- UTT2
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PHL-2 | c.44G>A | p.Arg15Lys | missense variant | moderate | contig2621 | 337613 | G/A | |
PHL-2 | c.1837G>A | p.Glu613Lys | missense variant | moderate | contig2621 | 341115 | G/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
AAE1-2 | c.409C>T | p.Arg137Cys | missense variant | moderate | contig81 | 209371 | C/T |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
FT | c.194A>T | p.His65Leu | missense variant | moderate | contig1561 | 3124618 | A/T |
|
FT | c.196A>G | p.Ile66Val | missense variant | moderate | contig1561 | 3124620 | A/G | |
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
AAE1-3 | c.101A>G | p.Tyr34Cys | missense variant | moderate | contig976 | 1083974 | T/C |
|
GGR | c.637G>A | p.Ala213Thr | missense variant | moderate | contig2282 | 549629 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.143 AOAC MI 501 (RSP11748)
- 0.148 AOAC MI 597 (RSP11761)
- 0.151 Durban Poison 1 (RSP11013)
- 0.152 Lift (RSP11378)
- 0.152 AOAC MI 599 (RSP11762)
- 0.153 Badger (RSP11614)
- 0.154 AOAC MI 508 (RSP11750)
- 0.156 AOAC MI 535 (RSP11754)
- 0.157 AOAC MI 548 (RSP11757)
- 0.157 AOAC MI 588 (RSP11760)
- 0.157 Serious Happiness (RSP10763)
- 0.159 AOAC MI 504 (RSP11749)
- 0.159 AOAC MI 533 (RSP11753)
- 0.159 AOAC MI 567 (RSP11758)
- 0.159 AOAC MI 545 (RSP11756)
- 0.160 AOAC MI 569 (RSP11759)
- 0.161 Domnesia (RSP11184)
- 0.164 Rest (RSP11377)
- 0.164 AOAC MI 542 (RSP11755)
- 0.167 VIR 483 (SRR14708240)
Nearest genetic relatives (Base Tree)
- 0.211 KYRG-11 (RSP11051)
- 0.221 Italian Kiss (RSP11034)
- 0.222 Tisza (RSP10659)
- 0.229 Golden Goat 2 (RSP10991)
- 0.229 Liberty Haze (RSP11000)
- 0.230 Blueberry Cheesecake (RSP10684)
- 0.231 Hermaphrodite Research Sample1 (RSP11049)
- 0.231 Lovrin (RSP10658)
- 0.236 Recon (RSP10755)
- 0.244 RKM-2018-019 (RSP11111)
- 0.244 RKM-2018-029 (RSP11121)
- 0.245 CST (RSP11002)
- 0.246 Kimbo Slice (RSP10997)
- 0.247 RKM-2018-020 (RSP11112)
- 0.250 Durban Poison (RSP11014)
- 0.250 Skunk 18 (RSP11038)
- 0.250 Tisza (RSP11044)
- 0.250 Santhica27 (RSP11047)
- 0.250 Hermaphrodite ResearchSample2 (RSP11050)
- 0.256 RKM-2018-005 (RSP11096)
Most genetically distant strains (All Samples)
- 0.425 JL 4th Gen 1 (RSP11193)
- 0.420 JL yellow (RSP11075)
- 0.398 JL 3rd Gen Father (RSP11196)
- 0.392 JL 3rd Gen Mother (RSP11197)
- 0.390 JL 4th Gen 5 (RSP11199)
- 0.388 Red Eye OG (RSP11190)
- 0.385 JL 4th Gen 6 (RSP11200)
- 0.382 80E (RSP11213)
- 0.377 JL 3rd Gen Mother (RSP11214)
- 0.360 JL 4th Gen 2 (RSP11194)
- 0.360 Skywalker OG (RSP10837)
- 0.356 Abacus (RSP11266)
- 0.351 Right Mark (RSP11628)
- 0.348 Sour Raspberry (RSP10551)
- 0.347 Grape Stomper (RSP11180)
- 0.341 SFVxTK (RSP11072)
- 0.340 Tanao Sri-white 80 (RSP11621)
- 0.340 Chem 91 (RSP11185)
- 0.339 JL 4th Gen 4 (RSP11198)
- 0.339 White Label 1 (RSP11336)
Most genetically distant strains (Base Tree)
- 0.437 JL yellow (RSP11075)
- 0.382 Sour Raspberry (RSP10551)
- 0.342 Skywalker OG (RSP10837)
- 0.340 Kush Hemp E1 (RSP11128)
- 0.325 Blueberry Cheesecake (RSP10680)
- 0.323 Carmagnola (RSP10979)
- 0.321 RKM-2018-002 (RSP11093)
- 0.319 RKM-2018-028 (RSP11120)
- 0.318 Cbot-2019-006 (RSP11134)
- 0.316 Cbot-2019-004 (RSP11132)
- 0.313 RKM-2018-031 (RSP11123)
- 0.313 RKM-2018-018 (RSP11110)
- 0.306 Ivory (RSP10668)
- 0.304 Cbot-2019-005 (RSP11133)
- 0.304 Jiangji (RSP10653)
- 0.302 Kyrgyz Gold (RSP11054)
- 0.299 RKM-2018-009 (RSP11100)
- 0.298 Tygra (RSP10667)
- 0.296 Blue Dream (RSP11033)
- 0.296 QUEEN JESUS (RSP10105)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2