VIR 483
SRR 14708240
General Information
- Sample Name
- UTT1
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.8G>A | p.Cys3Tyr | missense variant | moderate | contig1772 | 2082234 | G/A |
|
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.503A>G | p.Asn168Ser | missense variant | moderate | contig1772 | 2082729 | A/G | |
CBDAS | c.587A>G | p.Asn196Ser | missense variant | moderate | contig1772 | 2082813 | A/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C | |
CBDAS | c.1628G>A | p.Arg543His | missense variant | moderate | contig1772 | 2083854 | G/A |
|
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b |
c.235_239dup |
p.Phe80fs | frameshift variant | high | contig700 | 2724195 | G/GAATCT |
|
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
PKSG-4b | c.134G>A | p.Arg45Gln | missense variant | moderate | contig700 | 2724301 | C/T |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
ELF3 | c.305G>A | p.Arg102His | missense variant | moderate | contig97 | 242011 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF3 | c.2203C>A | p.His735Asn | missense variant | moderate | contig97 | 245034 | C/A |
|
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.160A>C | p.Thr54Pro | missense variant | moderate | contig121 | 2835867 | A/C | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1118C>G | p.Thr373Ser | missense variant | moderate | contig81 | 210080 | C/G |
|
AAE1-2 | c.1177G>A | p.Asp393Asn | missense variant | moderate | contig81 | 210139 | G/A |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1846A>G | p.Lys616Glu | missense variant | moderate | contig1460 | 1190278 | T/C |
|
EMF2 | c.434C>T | p.Ser145Phe | missense variant | moderate | contig954 | 3049270 | C/T | |
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1742C>G | p.Thr581Ser | missense variant | moderate | contig954 | 3059899 | C/G |
|
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT |
c.35_43dupAT |
p.Asn12_Asn1 |
disruptive inframe insertion | moderate | contig1561 | 3124441 | T/TTAATAATAA |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
FLD | c.2869C>T | p.His957Tyr | missense variant | moderate | contig1450 | 2044163 | G/A |
|
FLD | c.2831A>G | p.Glu944Gly | missense variant | moderate | contig1450 | 2044201 | T/C |
|
AAE1-3 | c.425T>C | p.Leu142Pro | missense variant | moderate | contig976 | 1083600 | A/G |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.403G>T | p.Asp135Tyr | missense variant | moderate | contig976 | 1083622 | C/A |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.154G>A | p.Val52Ile | missense variant | moderate | contig976 | 1083921 | C/T |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.101A>G | p.Tyr34Cys | missense variant | moderate | contig976 | 1083974 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
GGR | c.810A>C | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/C |
|
Nearest genetic relatives (All Samples)
- 0.159 VIR 483 (SRR14708238)
- 0.167 VIR 483 (SRR14708239)
- 0.182 AOAC MI 542 (RSP11755)
- 0.182 AOAC MI 597 (RSP11761)
- 0.185 AOAC MI 548 (RSP11757)
- 0.188 AOAC MI 508 (RSP11750)
- 0.188 AOAC MI 569 (RSP11759)
- 0.189 KYRG-11 (RSP11051)
- 0.189 AOAC MI 545 (RSP11756)
- 0.190 B52 (SRR14708255)
- 0.191 AOAC MI 504 (RSP11749)
- 0.191 Doug s Varin (RSP11243)
- 0.191 Miss X (RSP10999)
- 0.191 AOAC MI 599 (RSP11762)
- 0.194 AOAC MI 533 (RSP11753)
- 0.194 AOAC MI 588 (RSP11760)
- 0.195 AOAC MI 532 (RSP11752)
- 0.195 AOAC MI 567 (RSP11758)
- 0.196 AOAC MI 501 (RSP11748)
- 0.196 Lifter (RSP11365)
Nearest genetic relatives (Base Tree)
- 0.188 Liberty Haze (RSP11000)
- 0.223 UP Sunrise (RSP10989)
- 0.230 KYRG-11 (RSP11051)
- 0.235 Lovrin (RSP10658)
- 0.242 Blueberry Cheesecake (RSP10684)
- 0.258 Carmagnola (RSP11037)
- 0.260 Tisza (RSP11044)
- 0.263 Futura 75 (RSP10664)
- 0.281 RKM-2018-031 (RSP11123)
- 0.281 Hermaphrodite ResearchSample2 (RSP11050)
- 0.284 Tisza (RSP10659)
- 0.290 Jiangji (RSP10653)
- 0.290 Kimbo Slice (RSP10997)
- 0.291 Carmagnola (RSP10979)
- 0.294 Tygra (RSP10667)
- 0.294 Santhica27 (RSP11047)
- 0.299 USO 31 (RSP10981)
- 0.301 Kyrgyz Gold (RSP11054)
- 0.303 Blueberry Cheesecake (RSP10672)
- 0.307 Cherry (RSP11143)
Most genetically distant strains (All Samples)
- 0.405 80E (RSP11213)
- 0.399 Grape Stomper (RSP11180)
- 0.396 Red Eye OG (RSP11190)
- 0.393 Cherry Blossom (RSP11323)
- 0.389 Sour Tsunami (RSP11187)
- 0.387 Unknown- Cherry Wine - 003 (RSP11270)
- 0.384 Feral (RSP11205)
- 0.382 Danny Noonan (RSP11070)
- 0.380 UP Sunset (RSP11256)
- 0.380 JL 4th Gen 5 (RSP11199)
- 0.379 Purple Strawberry AK47 1 1 (RSP11415)
- 0.379 Unknown- Cherry Wine - 001 (RSP11268)
- 0.378 JL yellow (RSP11075)
- 0.374 RKM-2018-001 (RSP11092)
- 0.373 Northern Lights (RSP11501)
- 0.373 Kush Hemp E1 (RSP11128)
- 0.371 IUP3 (SRR14708256)
- 0.368 JL 3rd Gen Mother (RSP11214)
- 0.367 JL 2 (RSP11076)
- 0.367 Escape Velocity (RSP11165)
Most genetically distant strains (Base Tree)
- 0.406 JL yellow (RSP11075)
- 0.389 Blueberry Cheesecake (RSP10680)
- 0.377 Kush Hemp E1 (RSP11128)
- 0.372 Skywalker OG (RSP10837)
- 0.371 Cbot-2019-004 (RSP11132)
- 0.365 Blue Dream (RSP11033)
- 0.364 RKM-2018-018 (RSP11110)
- 0.357 RKM-2018-026 (RSP11118)
- 0.353 Black Beauty (RSP11035)
- 0.353 RKM-2018-006 (RSP11097)
- 0.353 Pie Hoe (RSP11073)
- 0.352 CST (RSP11002)
- 0.351 Durban Poison (RSP11014)
- 0.351 Cbot-2019-005 (RSP11133)
- 0.349 RKM-2018-002 (RSP11093)
- 0.346 Sour Raspberry (RSP10551)
- 0.343 RKM-2018-028 (RSP11120)
- 0.343 RKM-2018-032 (RSP11124)
- 0.343 RKM-2018-034 (RSP11126)
- 0.342 Feral (RSP10890)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 16
- Concordance:
- 12
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2