Bialobrzeskie
SRR 14708244
General Information
- Sample Name
- PBE
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
|
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2830A>G | p.Asn944Asp | missense variant | moderate | contig2621 | 342873 | A/G |
|
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
DXR-2 | c.1319T>G | p.Ile440Ser | missense variant | moderate | contig380 | 285250 | A/C |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1435G>C | p.Ala479Pro | missense variant | moderate | contig97 | 244266 | G/C |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2140C>T | p.Pro714Ser | missense variant | moderate | contig97 | 244971 | C/T | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.409C>T | p.Arg137Cys | missense variant | moderate | contig81 | 209371 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1115A>G | p.Glu372Gly | missense variant | moderate | contig81 | 210077 | A/G |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2531C>T | p.Thr844Ile | missense variant | moderate | contig1450 | 2045209 | G/A |
|
FLD | c.2318T>A | p.Phe773Tyr | missense variant | moderate | contig1450 | 2045422 | A/T |
|
FLD | c.1376T>C | p.Ile459Thr | missense variant | moderate | contig1450 | 2046658 | A/G |
|
AAE1-3 | c.659G>A | p.Arg220Gln | missense variant | moderate | contig976 | 1083195 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
|
AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
|
GGR | c.32C>A | p.Thr11Lys | missense variant | moderate | contig2282 | 549024 | C/A |
|
GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.541G>A | p.Val181Ile | missense variant | moderate | contig2282 | 549533 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.157 Kompolti (SRR14708277)
- 0.167 Super Blue Dream (RSP11011)
- 0.188 R1in136 (SRR14708237)
- 0.197 Lovrin (RSP10658)
- 0.202 KYRG-11 (RSP11051)
- 0.203 Santhica 27 (RSP10665)
- 0.209 B52 (SRR14708255)
- 0.209 AOAC MI 533 (RSP11753)
- 0.210 AOAC MI 569 (RSP11759)
- 0.213 Futura 75 (RSP10664)
- 0.214 AOAC MI 504 (RSP11749)
- 0.215 AOAC MI 501 (RSP11748)
- 0.216 Lift (RSP11378)
- 0.217 AOAC MI 535 (RSP11754)
- 0.218 Ferimon 12 (SRR14708233)
- 0.219 AOAC MI 532 (RSP11752)
- 0.219 VIR 483 (SRR14708238)
- 0.220 VIR 483 (SRR14708240)
- 0.221 AOAC MI 545 (RSP11756)
- 0.222 AOAC MI 567 (RSP11758)
Nearest genetic relatives (Base Tree)
- 0.221 KYRG-11 (RSP11051)
- 0.222 Lovrin (RSP10658)
- 0.240 Futura 75 (RSP10664)
- 0.256 Tisza (RSP10659)
- 0.259 Carmagnola (RSP11037)
- 0.260 Santhica27 (RSP11047)
- 0.269 Tygra (RSP10667)
- 0.270 Tisza (RSP11044)
- 0.272 Monoica (RSP10241)
- 0.284 UP Sunrise (RSP10989)
- 0.284 Liberty Haze (RSP11000)
- 0.286 Blueberry Cheesecake (RSP10684)
- 0.287 Jiangji (RSP10653)
- 0.287 RKM-2018-029 (RSP11121)
- 0.297 Cherry (RSP11143)
- 0.297 Cbot-2019-001 (RSP11129)
- 0.299 Cherry (RSP11142)
- 0.300 Hermaphrodite ResearchSample2 (RSP11050)
- 0.304 RKM-2018-005 (RSP11096)
- 0.308 Fedora 17 (RSP10661)
Most genetically distant strains (All Samples)
- 0.438 JL 4th Gen 5 (RSP11199)
- 0.435 JL yellow (RSP11075)
- 0.433 JL 4th Gen 6 (RSP11200)
- 0.428 JL 4th Gen 4 (RSP11198)
- 0.422 Sour Tsunami (RSP11187)
- 0.413 UP Sunset (RSP11256)
- 0.411 JL 3rd Gen Father (RSP11196)
- 0.405 Danny Noonan (RSP11070)
- 0.400 JL 3rd Gen Mother (RSP11214)
- 0.397 JL Cross 13 (RSP11514)
- 0.397 Cherry Blossom (RSP11274)
- 0.396 Center Mark (RSP11629)
- 0.396 Dave Pineapple (RSP11626)
- 0.396 JL 2 (RSP11076)
- 0.396 RKM-2018-001 (RSP11092)
- 0.395 Black Beauty (RSP11175)
- 0.395 Red Eye OG (RSP11190)
- 0.395 Bordello (RSP11228)
- 0.395 80E (RSP11213)
- 0.393 Blueberry Cheesecake (RSP10680)
Most genetically distant strains (Base Tree)
- 0.444 JL yellow (RSP11075)
- 0.414 RKM-2018-026 (RSP11118)
- 0.401 Blueberry Cheesecake (RSP10680)
- 0.393 RKM-2018-034 (RSP11126)
- 0.393 Durban Poison (RSP11014)
- 0.387 Carmagnola (RSP10979)
- 0.381 Pie Hoe (RSP11073)
- 0.378 Blue Dream (RSP11033)
- 0.377 RKM-2018-018 (RSP11110)
- 0.374 RKM-2018-002 (RSP11093)
- 0.373 Hermaphrodite Research Sample1 (RSP11049)
- 0.371 Black Beauty (RSP11035)
- 0.369 RKM-2018-006 (RSP11097)
- 0.366 CST (RSP11002)
- 0.365 Skywalker OG (RSP10837)
- 0.362 Cbot-2019-004 (RSP11132)
- 0.361 Cbot-2019-005 (RSP11133)
- 0.360 Sour Raspberry (RSP10551)
- 0.360 Gold Cracker (RSP11048)
- 0.357 RKM-2018-028 (RSP11120)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 10
- Concordance:
- 10
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 1