PCL1
SRR 14708246
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
Nearest genetic relatives (All Samples)
- 0.071 AOAC MI 545 (RSP11756)
- 0.073 AOAC MI 532 (RSP11752)
- 0.073 AOAC MI 588 (RSP11760)
- 0.074 Lift (RSP11378)
- 0.074 AOAC MI 508 (RSP11750)
- 0.074 AOAC MI 542 (RSP11755)
- 0.080 AOAC MI 548 (RSP11757)
- 0.080 AOAC MI 567 (RSP11758)
- 0.082 AOAC MI 504 (RSP11749)
- 0.083 AOAC MI 501 (RSP11748)
- 0.083 AOAC MI 597 (RSP11761)
- 0.083 B52 (SRR14708255)
- 0.085 AOAC MI 535 (RSP11754)
- 0.087 AOAC MI 533 (RSP11753)
- 0.088 Serious Happiness (RSP10763)
- 0.088 AOAC MI 599 (RSP11762)
- 0.092 AOAC MI 569 (RSP11759)
- 0.093 Electra (RSP11366)
- 0.096 Doug s Varin (RSP11243)
- 0.104 Suver Haze (RSP11364)
Nearest genetic relatives (Base Tree)
- 0.108 CST (RSP11002)
- 0.129 KYRG-11 (RSP11051)
- 0.145 Hermaphrodite ResearchSample2 (RSP11050)
- 0.150 Blueberry Cheesecake (RSP10684)
- 0.150 Liberty Haze (RSP11000)
- 0.174 RKM-2018-020 (RSP11112)
- 0.177 Golden Goat 2 (RSP10991)
- 0.182 RKM-2018-003 (RSP11094)
- 0.190 UP Sunrise (RSP10989)
- 0.207 Tygra (RSP10667)
- 0.208 Recon (RSP10755)
- 0.211 The Gift (RSP10988)
- 0.211 RKM-2018-022 (RSP11114)
- 0.211 Jiangji (RSP10653)
- 0.213 Gold Cracker (RSP11048)
- 0.222 Durban Poison (RSP11014)
- 0.222 Italian Kiss (RSP11034)
- 0.226 QUEEN JESUS (RSP10105)
- 0.226 Blueberry Cheesecake (RSP10672)
- 0.227 RKM-2018-029 (RSP11121)
Most genetically distant strains (All Samples)
- 0.455 Feral (RSP11205)
- 0.440 80E (RSP11213)
- 0.423 JL yellow (RSP11075)
- 0.400 JL 3rd Gen Mother (RSP11214)
- 0.400 Carmaleonte (RSP11207)
- 0.396 80E (RSP11211)
- 0.394 Danny Noonan (RSP11070)
- 0.388 Kush Hemp E1 (RSP11128)
- 0.384 JL 3rd Gen Mother (RSP11197)
- 0.375 JL 4th Gen 2 (RSP11194)
- 0.369 Ivory (RSP10668)
- 0.367 Santhica27 (RSP10056)
- 0.365 Fedora 17 (RSP10661)
- 0.362 USO 31 (RSP10983)
- 0.361 USO31 (RSP10233)
- 0.358 Feral (RSP11206)
- 0.357 Tanao Sri-white 80 (RSP11621)
- 0.356 Grape Stomper (RSP11180)
- 0.350 JL 4th Gen 5 (RSP11199)
- 0.349 GG4 (RSP11978)
Most genetically distant strains (Base Tree)
- 0.397 JL yellow (RSP11075)
- 0.373 Kush Hemp E1 (RSP11128)
- 0.347 Cbot-2019-005 (RSP11133)
- 0.346 Fedora 17 (RSP10661)
- 0.342 Ivory (RSP10668)
- 0.318 Cbot-2019-006 (RSP11134)
- 0.314 Blueberry Cheesecake (RSP10680)
- 0.313 RKM-2018-002 (RSP11093)
- 0.308 Carmagnola (RSP11037)
- 0.305 Skywalker OG (RSP10837)
- 0.305 RKM-2018-006 (RSP11097)
- 0.304 Lovrin (RSP10658)
- 0.304 Cbot-2019-004 (RSP11132)
- 0.302 Futura 75 (RSP10664)
- 0.300 RKM-2018-026 (RSP11118)
- 0.297 RKM-2018-033 (RSP11125)
- 0.295 RKM-2018-028 (RSP11120)
- 0.295 Tisza (RSP11044)
- 0.294 Carmagnola (RSP10979)
- 0.294 Feral (RSP10890)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 8
- Concordance:
- 7