PID2
SRR 14708247
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 | c.744C>G | p.Asp248Glu | missense variant | moderate | contig676 | 168993 | C/G |
|
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 |
c.850_851ins |
p.His284fs | frameshift variant | high | contig676 | 169640 | C/CT |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.455A>C | p.Asp152Ala | missense variant | moderate | contig2621 | 339191 | A/C | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>G | p.Asn944Asp | missense variant | moderate | contig2621 | 342873 | A/G |
|
PHL-2 |
c.2903_2905d |
p.Ser968dup | disruptive inframe insertion | moderate | contig2621 | 342939 | T/TGCA | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PHL-2 | c.3552delG | p.Lys1185fs | frameshift variant | high | contig2621 | 343593 | CG/C |
|
PKSG-4b | c.544G>T | p.Gly182Trp | missense variant | moderate | contig700 | 2721129 | C/A |
|
PKSG-4b | c.541G>C | p.Val181Leu | missense variant | moderate | contig700 | 2721132 | C/G |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.811G>A | p.Gly271Arg | missense variant | moderate | contig97 | 242517 | G/A |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1473A>C | p.Lys491Asn | missense variant | moderate | contig97 | 244304 | A/C |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1807G>C | p.Gly603Arg | missense variant | moderate | contig97 | 244638 | G/C |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.1982A>C | p.Asn661Thr | missense variant | moderate | contig97 | 244813 | A/C |
|
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF5 | c.845C>A | p.Ser282Tyr | missense variant | moderate | contig382 | 880707 | C/A |
|
ELF5 | c.1556A>G | p.Gln519Arg | missense variant | moderate | contig382 | 881994 | A/G |
|
ELF5 | c.1588G>T | p.Glu530* | stop gained | high | contig382 | 882026 | G/T |
|
ELF5 | c.1589A>T | p.Glu530Val | missense variant | moderate | contig382 | 882027 | A/T |
|
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
aPT1 | c.766T>C | p.Tyr256His | missense variant | moderate | contig121 | 2841545 | T/C |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.688G>A | p.Asp230Asn | missense variant | moderate | contig81 | 209650 | G/A |
|
AAE1-2 |
c.947_948ins |
p.Asp317fs | frameshift variant | high | contig81 | 209908 | C/CATAG |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 |
c.950_954del |
p.Asp317fs | frameshift variant | high | contig81 | 209911 | GACCAA/G |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 |
c.955_956ins |
p.Arg319fs | frameshift variant | high | contig81 | 209917 | C/CT |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PHL-1 | c.407G>A | p.Arg136Gln | missense variant | moderate | contig1439 | 1491441 | C/T | |
PHL-1 | c.176G>A | p.Gly59Glu | missense variant | moderate | contig1439 | 1492817 | C/T |
|
PHL-1 | c.175G>A | p.Gly59Arg | missense variant | moderate | contig1439 | 1492818 | C/T | |
Edestin | c.230A>G | p.Glu77Gly | missense variant | moderate | contig850 | 3065060 | T/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.13C>G | p.Leu5Val | missense variant | moderate | contig1561 | 3124437 | C/G | |
FT |
c.38_43dupAT |
p.Asn13_Asn1 |
disruptive inframe insertion | moderate | contig1561 | 3124441 | T/TTAATAA |
|
FT | c.440A>C |
p.Ter147Sere |
stop lost & splice region variant | high | contig1561 | 3126679 | A/C | |
aPT4 | c.224T>C | p.Ile75Thr | missense variant | moderate | contig121 | 2828880 | T/C |
|
aPT4 | c.463G>T | p.Val155Phe | missense variant | moderate | contig121 | 2830658 | G/T |
|
aPT4 | c.471G>C | p.Leu157Phe | missense variant | moderate | contig121 | 2830666 | G/C |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2929T>C | p.Phe977Leu | missense variant | moderate | contig1450 | 2044103 | A/G | |
FLD | c.2840A>G | p.Asn947Ser | missense variant | moderate | contig1450 | 2044192 | T/C |
|
FLD | c.2743G>T | p.Val915Leu | missense variant | moderate | contig1450 | 2044534 | C/A |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
FLD | c.296G>A | p.Ser99Asn | missense variant | moderate | contig1450 | 2047738 | C/T |
|
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.487A>T | p.Met163Leu | missense variant | moderate | contig976 | 1083538 | T/A |
|
AAE1-3 | c.467T>C | p.Met156Thr | missense variant | moderate | contig976 | 1083558 | A/G |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.327G>T | p.Trp109Cys | missense variant | moderate | contig976 | 1083698 | C/A |
|
AAE1-3 | c.301A>T | p.Thr101Ser | missense variant | moderate | contig976 | 1083724 | T/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.281C>G | p.Thr94Ser | missense variant | moderate | contig976 | 1083744 | G/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.80C>T | p.Thr27Ile | missense variant | moderate | contig976 | 1083995 | G/A |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.48C>A | p.Cys16* | stop gained | high | contig976 | 1084027 | G/T |
|
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 | c.3706A>G | p.Thr1236Ala | missense variant | moderate | contig1225 | 2285321 | A/G |
|
GGR | c.232G>C | p.Val78Leu | missense variant | moderate | contig2282 | 549224 | G/C |
|
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 |
c.1880_1891d |
p.His627_Gly |
disruptive inframe deletion | moderate | contig93 | 3339981 |
CTGGCCATGGCC |
|
PKSB-3 | c.1901C>G | p.Ala634Gly | missense variant | moderate | contig93 | 3340008 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.178 Super Blue Dream (RSP11011)
- 0.202 Blue Dream (RSP11017)
- 0.211 AOAC MI 567 (RSP11758)
- 0.215 B52 (SRR14708255)
- 0.216 AOAC MI 508 (RSP11750)
- 0.216 AOAC MI 533 (RSP11753)
- 0.218 AOAC MI 542 (RSP11755)
- 0.218 AOAC MI 597 (RSP11761)
- 0.220 Durban Poison 1 (RSP11013)
- 0.221 Suver Haze (RSP11364)
- 0.224 AOAC MI 548 (RSP11757)
- 0.224 AOAC MI 569 (RSP11759)
- 0.224 AOAC MI 588 (RSP11760)
- 0.224 AOAC MI 535 (RSP11754)
- 0.225 AOAC MI 532 (RSP11752)
- 0.228 AOAC MI 545 (RSP11756)
- 0.228 Miss X (RSP10999)
- 0.229 AOAC MI 501 (RSP11748)
- 0.229 AOAC MI 599 (RSP11762)
- 0.229 Serious Happiness (RSP10763)
Nearest genetic relatives (Base Tree)
- 0.264 Liberty Haze (RSP11000)
- 0.271 UP Sunrise (RSP10989)
- 0.287 CST (RSP11002)
- 0.292 KYRG-11 (RSP11051)
- 0.292 Golden Goat 2 (RSP10991)
- 0.295 Hermaphrodite Research Sample1 (RSP11049)
- 0.298 RKM-2018-029 (RSP11121)
- 0.301 RKM-2018-003 (RSP11094)
- 0.303 Recon (RSP10755)
- 0.305 Black Beauty (RSP11035)
- 0.305 Blueberry Cheesecake (RSP10684)
- 0.309 Cherry (RSP11143)
- 0.310 Cbot-2019-004 (RSP11132)
- 0.314 Pie Hoe (RSP11073)
- 0.314 Jiangji (RSP10653)
- 0.316 Tygra (RSP10667)
- 0.316 Blueberry Cheesecake (RSP10680)
- 0.318 Italian Kiss (RSP11034)
- 0.320 RKM-2018-031 (RSP11123)
- 0.320 Cherry (RSP11142)
Most genetically distant strains (All Samples)
- 0.428 Cherry Blossom (RSP11323)
- 0.420 Cherry Blossom (RSP11311)
- 0.414 Cherry Blossom (RSP11274)
- 0.410 Carmaleonte (RSP11207)
- 0.407 RKM-2018-034 (RSP11126)
- 0.405 Cherry Blossom (RSP11334)
- 0.404 Unknown- Cherry Wine - 001 (RSP11268)
- 0.397 Diana (RSP10235)
- 0.396 Santhica 27 (RSP10665)
- 0.396 Star Dawg (RSP11352)
- 0.395 Red Eye OG (RSP11190)
- 0.395 Cherry Blossom (RSP11309)
- 0.394 Feral (RSP11205)
- 0.392 SFVxTK (RSP11072)
- 0.391 Center Mark (RSP11629)
- 0.391 Skywalker OG (RSP10837)
- 0.390 Kush Hemp E1 (RSP11128)
- 0.390 JL yellow (RSP11075)
- 0.388 Cherry Blossom (RSP11312)
- 0.387 Skunk 18 (RSP11038)
Most genetically distant strains (Base Tree)
- 0.408 RKM-2018-034 (RSP11126)
- 0.393 RKM-2018-022 (RSP11114)
- 0.391 Skunk 18 (RSP11038)
- 0.385 RKM-2018-002 (RSP11093)
- 0.383 Kush Hemp E1 (RSP11128)
- 0.380 JL yellow (RSP11075)
- 0.379 Skywalker OG (RSP10837)
- 0.377 RKM-2018-033 (RSP11125)
- 0.373 Cbot-2019-005 (RSP11133)
- 0.363 RKM-2018-019 (RSP11111)
- 0.359 QUEEN JESUS (RSP10105)
- 0.357 RKM-2018-032 (RSP11124)
- 0.356 Blueberry Cheesecake (RSP10672)
- 0.351 RKM-2018-006 (RSP11097)
- 0.349 RKM-2018-026 (RSP11118)
- 0.349 Fedora 17 (RSP10661)
- 0.346 Tisza (RSP11044)
- 0.345 Kyrgyz Gold (RSP11054)
- 0.345 Carmagnola (RSP10979)
- 0.344 RKM-2018-018 (RSP11110)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 17
- Concordance:
- 14
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4