PID1
SRR 14708248
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
|
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.455A>C | p.Asp152Ala | missense variant | moderate | contig2621 | 339191 | A/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1438C>G | p.Leu480Val | missense variant | moderate | contig2621 | 340716 | C/G |
|
PHL-2 | c.1450G>A | p.Glu484Lys | missense variant | moderate | contig2621 | 340728 | G/A |
|
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2582C>G | p.Pro861Arg | missense variant | moderate | contig2621 | 342625 | C/G |
|
PHL-2 | c.3552delG | p.Lys1185fs | frameshift variant | high | contig2621 | 343593 | CG/C |
|
PHL-2 |
c.3556_3557d |
p.Lys1186fs | frameshift variant | high | contig2621 | 343598 | GAA/G | |
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.273-2A>T | splice acceptor variant & intron variant | high | contig700 | 2723865 | T/A |
|
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a |
c.-22_2delTA |
p.Met1del | start lost & conservative inframe deletion | high | contig700 | 1945631 |
CATATTATTATT |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
OAC-2 | c.22G>A | p.Val8Ile | missense variant | moderate | contig931 | 110317 | C/T |
|
FAD2-2 | c.54T>A | p.His18Gln | missense variant | moderate | contig83 | 1803315 | A/T |
|
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1385C>T | p.Ala462Val | missense variant | moderate | contig97 | 244216 | C/T |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
aPT1 | c.160A>C | p.Thr54Pro | missense variant | moderate | contig121 | 2835867 | A/C | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.958G>A | p.Gly320Ser | missense variant | moderate | contig121 | 2842731 | G/A |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 |
c.947_948ins |
p.Asp317fs | frameshift variant | high | contig81 | 209908 | C/CATAG |
|
AAE1-2 |
c.950_954del |
p.Asp317fs | frameshift variant | high | contig81 | 209911 | GACCAA/G |
|
AAE1-2 |
c.955_956ins |
p.Arg319fs | frameshift variant | high | contig81 | 209917 | C/CT |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1115A>G | p.Glu372Gly | missense variant | moderate | contig81 | 210077 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 | c.99G>T | p.Glu33Asp | missense variant | moderate | contig1439 | 1493793 | C/A |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.6773T>C | p.Leu2258Ser | missense variant | moderate | contig1460 | 1184314 | A/G | |
PIE1-2 | c.6307A>C | p.Lys2103Gln | missense variant | moderate | contig1460 | 1185177 | T/G | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
FT | c.419G>A | p.Ser140Asn | missense variant | moderate | contig1561 | 3126658 | G/A | |
FT | c.440A>C |
p.Ter147Sere |
stop lost & splice region variant | high | contig1561 | 3126679 | A/C | |
aPT4 | c.80A>G | p.Lys27Arg | missense variant | moderate | contig121 | 2828736 | A/G |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 | c.916C>T | p.His306Tyr | missense variant & splice region variant | moderate | contig121 | 2832711 | C/T |
|
AAE1-3 | c.467T>C | p.Met156Thr | missense variant | moderate | contig976 | 1083558 | A/G |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.141A>G | p.Ile47Met | missense variant | moderate | contig976 | 1083934 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
FAD7A-1 | c.*342+1A>C | splice donor variant & intron variant | high | contig510 | 71471 | A/C |
|
|
PKSB-3 | c.64A>C | p.Ser22Arg | missense variant | moderate | contig93 | 3333355 | A/C |
|
PKSB-3 | c.1960G>C | p.Glu654Gln | missense variant | moderate | contig93 | 3340067 | G/C |
|
PKSB-3 | c.1978A>G | p.Asn660Asp | missense variant | moderate | contig93 | 3340085 | A/G |
|
Nearest genetic relatives (All Samples)
- 0.173 Tisza (RSP10659)
- 0.187 AOAC MI 535 (RSP11754)
- 0.190 AOAC MI 532 (RSP11752)
- 0.190 Durban Poison 1 (RSP10996)
- 0.190 IBR3 (SRR14708249)
- 0.195 B52 (SRR14708255)
- 0.195 AOAC MI 533 (RSP11753)
- 0.198 Doug s Varin (RSP11243)
- 0.199 PCL1 (SRR14708246)
- 0.200 Durban Poison 1 (RSP11013)
- 0.202 Serious Happiness (RSP10763)
- 0.204 Lift (RSP11378)
- 0.205 Miss X (RSP10999)
- 0.206 IBR2 (SRR14708250)
- 0.207 Lifter (RSP11365)
- 0.207 Electra (RSP11366)
- 0.208 AOAC MI 501 (RSP11748)
- 0.209 AOAC MI 504 (RSP11749)
- 0.210 AOAC MI 599 (RSP11762)
- 0.211 AOAC MI 548 (RSP11757)
Nearest genetic relatives (Base Tree)
- 0.213 Tisza (RSP10659)
- 0.221 KYRG-11 (RSP11051)
- 0.222 Durban Poison (RSP11014)
- 0.231 Liberty Haze (RSP11000)
- 0.237 Jiangji (RSP10653)
- 0.250 UP Sunrise (RSP10989)
- 0.264 Recon (RSP10755)
- 0.265 The Gift (RSP10988)
- 0.267 Kyrgyz Gold (RSP11054)
- 0.271 Golden Goat 2 (RSP10991)
- 0.275 Black Beauty (RSP11035)
- 0.286 Blueberry Cheesecake (RSP10684)
- 0.288 CST (RSP11002)
- 0.291 RKM-2018-023 (RSP11115)
- 0.293 USO 31 (RSP10981)
- 0.293 Skunk 18 (RSP11038)
- 0.294 Hermaphrodite ResearchSample2 (RSP11050)
- 0.296 Tisza (RSP11044)
- 0.299 Blueberry Cheesecake (RSP10680)
- 0.301 Cbot-2019-006 (RSP11134)
Most genetically distant strains (All Samples)
- 0.406 Feral (RSP11205)
- 0.404 JL yellow (RSP11075)
- 0.404 JL 4th Gen 1 (RSP11193)
- 0.392 Cherry Blossom (RSP11318)
- 0.392 Unknown- Cherry Wine - 001 (RSP11268)
- 0.391 Diana (RSP10235)
- 0.388 Carmaleonte (RSP11207)
- 0.387 JL 4th Gen 4 (RSP11198)
- 0.384 Skywalker OG (RSP10837)
- 0.383 Italian Kiss (RSP10990)
- 0.383 JL 3rd Gen Mother (RSP11214)
- 0.383 JL 4th Gen 5 (RSP11199)
- 0.382 RKM-2018-012 (RSP11103)
- 0.381 UP Sunset (RSP11256)
- 0.380 Kush Hemp E1 (RSP11128)
- 0.380 Tanao Sri-white 80 (RSP11621)
- 0.379 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.378 Red Eye OG (RSP11190)
- 0.376 RKM-2018-002 (RSP11093)
- 0.375 JL 3rd Gen Father (RSP11196)
Most genetically distant strains (Base Tree)
- 0.420 Kush Hemp E1 (RSP11128)
- 0.408 Cbot-2019-005 (RSP11133)
- 0.407 JL yellow (RSP11075)
- 0.406 RKM-2018-002 (RSP11093)
- 0.400 Skywalker OG (RSP10837)
- 0.365 Cbot-2019-004 (RSP11132)
- 0.364 RKM-2018-019 (RSP11111)
- 0.357 Blueberry Cheesecake (RSP10672)
- 0.357 RKM-2018-009 (RSP11100)
- 0.352 Ivory (RSP10668)
- 0.351 RKM-2018-034 (RSP11126)
- 0.349 Carmagnola (RSP10979)
- 0.348 Italian Kiss (RSP11034)
- 0.348 RKM-2018-032 (RSP11124)
- 0.348 Blue Dream (RSP11033)
- 0.347 RKM-2018-033 (RSP11125)
- 0.345 Carmagnola (RSP11037)
- 0.339 QUEEN JESUS (RSP10105)
- 0.338 RKM-2018-020 (RSP11112)
- 0.335 RKM-2018-026 (RSP11118)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 12
- Concordance:
- 10
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5