IBR1
SRR 14708251
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 | c.744C>G | p.Asp248Glu | missense variant | moderate | contig676 | 168993 | C/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1364A>G | p.Asp455Gly | missense variant | moderate | contig2621 | 340642 | A/G |
|
PHL-2 | c.1381T>G | p.Phe461Val | missense variant | moderate | contig2621 | 340659 | T/G |
|
PHL-2 | c.1493G>A | p.Gly498Asp | missense variant | moderate | contig2621 | 340771 | G/A |
|
PHL-2 | c.1670T>C | p.Val557Ala | missense variant | moderate | contig2621 | 340948 | T/C |
|
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2582C>G | p.Pro861Arg | missense variant | moderate | contig2621 | 342625 | C/G |
|
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>G | p.Asn944Asp | missense variant | moderate | contig2621 | 342873 | A/G |
|
PHL-2 | c.2834A>G | p.Asn945Ser | missense variant | moderate | contig2621 | 342877 | A/G |
|
PHL-2 |
c.2903_2905d |
p.Ser968dup | disruptive inframe insertion | moderate | contig2621 | 342939 | T/TGCA | |
PHL-2 | c.3020T>A | p.Ile1007Asn | missense variant | moderate | contig2621 | 343063 | T/A |
|
PHL-2 | c.3373A>G | p.Thr1125Ala | missense variant | moderate | contig2621 | 343416 | A/G | |
PHL-2 | c.3412T>A | p.Ser1138Thr | missense variant | moderate | contig2621 | 343455 | T/A |
|
PKSG-4b |
c.535_545del |
p.Ile179fs | frameshift variant | high | contig700 | 2721127 |
CCCCACTCCAAT |
|
PKSG-4b | c.544G>T | p.Gly182Trp | missense variant | moderate | contig700 | 2721129 | C/A |
|
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.2216A>G | p.His739Arg | missense variant | moderate | contig97 | 245047 | A/G | |
HDS-2 | c.151G>T | p.Ala51Ser | missense variant | moderate | contig95 | 1989818 | G/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1061G>A | p.Arg354Lys | missense variant | moderate | contig81 | 210023 | G/A |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1115A>G | p.Glu372Gly | missense variant | moderate | contig81 | 210077 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.230A>G | p.Glu77Gly | missense variant | moderate | contig850 | 3065060 | T/C |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1381G>A | p.Asp461Asn | missense variant | moderate | contig1891 | 886367 | C/T |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
AAE1-3 | c.214G>T | p.Glu72* | stop gained | high | contig976 | 1083861 | C/A |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.179C>T | p.Thr60Ile | missense variant | moderate | contig976 | 1083896 | G/A |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
GGR | c.32C>A | p.Thr11Lys | missense variant | moderate | contig2282 | 549024 | C/A |
|
GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR | c.358G>A | p.Ala120Thr | missense variant | moderate | contig2282 | 549350 | G/A |
|
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.541G>A | p.Val181Ile | missense variant | moderate | contig2282 | 549533 | G/A |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
Nearest genetic relatives (All Samples)
- 0.147 IBR3 (SRR14708249)
- 0.170 IBR2 (SRR14708250)
- 0.180 Durban Poison 1 (RSP10996)
- 0.193 Lift (RSP11378)
- 0.212 IUP2 (SRR14708257)
- 0.213 BLACK JACK (RSP11346)
- 0.217 KYRG-11 (RSP11051)
- 0.218 Liberty Haze (RSP11000)
- 0.219 IUP1 (SRR14708258)
- 0.220 Doug s Varin (RSP11243)
- 0.221 Golden Goat 2 (RSP10991)
- 0.222 Durban Poison (RSP11014)
- 0.223 Blueberry Cheesecake (RSP10671)
- 0.224 Electra (RSP11366)
- 0.224 AOAC MI 599 (RSP11762)
- 0.224 Badger (RSP11614)
- 0.224 Tygra (RSP10667)
- 0.224 Hermaphrodite ResearchSample2 (RSP11050)
- 0.226 AOAC MI 542 (RSP11755)
- 0.228 Serious Happiness (RSP10763)
Nearest genetic relatives (Base Tree)
- 0.163 KYRG-11 (RSP11051)
- 0.220 Hermaphrodite ResearchSample2 (RSP11050)
- 0.220 Liberty Haze (RSP11000)
- 0.224 Durban Poison (RSP11014)
- 0.230 Tygra (RSP10667)
- 0.235 Golden Goat 2 (RSP10991)
- 0.235 Blueberry Cheesecake (RSP10684)
- 0.247 Tisza (RSP10659)
- 0.248 Kimbo Slice (RSP10997)
- 0.264 Pie Hoe (RSP11073)
- 0.266 Jiangji (RSP10653)
- 0.271 CST (RSP11002)
- 0.274 Gold Cracker (RSP11048)
- 0.276 RKM-2018-029 (RSP11121)
- 0.278 Hermaphrodite Research Sample1 (RSP11049)
- 0.278 RKM-2018-027 (RSP11119)
- 0.278 QUEEN JESUS (RSP10105)
- 0.278 Blueberry Cheesecake (RSP10680)
- 0.281 RKM-2018-018 (RSP11110)
- 0.284 Sour Raspberry (RSP10551)
Most genetically distant strains (All Samples)
- 0.404 CS (RSP11208)
- 0.385 JL 3rd Gen Father (RSP11196)
- 0.384 Tiborszallasie (RSP11210)
- 0.384 Carmaleonte (RSP11207)
- 0.379 Monoica (RSP10241)
- 0.377 UP Sunset (RSP11256)
- 0.374 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.372 Italian Kiss (RSP10990)
- 0.372 Cherry Blossom (RSP11309)
- 0.371 Candy Kush (RSP11492)
- 0.370 Cherry Blossom (RSP11323)
- 0.370 Wife (RSP11148)
- 0.369 Diana (RSP10235)
- 0.366 JL 4th Gen 6 (RSP11200)
- 0.366 JL 4th Gen 1 (RSP11193)
- 0.366 Santhica 27 (RSP10665)
- 0.365 JL yellow (RSP11075)
- 0.364 Harlox (RSP11178)
- 0.362 Red Eye OG (RSP11190)
- 0.360 Chem 91 (RSP11185)
Most genetically distant strains (Base Tree)
- 0.396 JL yellow (RSP11075)
- 0.377 Monoica (RSP10241)
- 0.364 RKM-2018-022 (RSP11114)
- 0.351 Futura 75 (RSP10664)
- 0.349 Fedora 17 (RSP10661)
- 0.346 Black Beauty (RSP11035)
- 0.341 RKM-2018-006 (RSP11097)
- 0.335 RKM-2018-002 (RSP11093)
- 0.335 Italian Kiss (RSP11034)
- 0.333 RKM-2018-034 (RSP11126)
- 0.332 RKM-2018-003 (RSP11094)
- 0.332 Santhica27 (RSP11047)
- 0.332 Kyrgyz Gold (RSP11054)
- 0.331 RKM-2018-023 (RSP11115)
- 0.326 Carmagnola (RSP10979)
- 0.326 Cbot-2019-005 (RSP11133)
- 0.325 Kush Hemp E1 (RSP11128)
- 0.324 Ivory (RSP10668)
- 0.321 Skywalker OG (RSP10837)
- 0.318 RKM-2018-020 (RSP11112)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 12
- Concordance:
- 11
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4