IBR1

SRR 14708251

Grower: Lanzhou University, Guangpeng Ren

General Information

Accession Date
May 31, 2021
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.25%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0226
male female SRR14708251

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

GPPs1

UniProt

c.744C>G p.Asp248Glu missense variant moderate contig676 168993

IGV: Start, Jump

C/G
NGS:
0.022
C90:
0.000
EMF1-2

UniProt

c.710A>C p.His237Pro missense variant moderate contig885 810

IGV: Start, Jump

A/C
NGS:
0.090
C90:
0.474
PHL-2 c.932T>C p.Leu311Pro missense variant moderate contig2621 340210

IGV: Start, Jump

T/C
NGS:
0.039
C90:
0.268
PHL-2 c.1057A>G p.Arg353Gly missense variant moderate contig2621 340335

IGV: Start, Jump

A/G
NGS:
0.096
C90:
0.555
PHL-2 c.1096G>A p.Ala366Thr missense variant moderate contig2621 340374

IGV: Start, Jump

G/A
NGS:
0.090
C90:
0.531
PHL-2 c.1364A>G p.Asp455Gly missense variant moderate contig2621 340642

IGV: Start, Jump

A/G
NGS:
0.000
C90:
0.000
PHL-2 c.1381T>G p.Phe461Val missense variant moderate contig2621 340659

IGV: Start, Jump

T/G
NGS:
0.000
C90:
0.000
PHL-2 c.1493G>A p.Gly498Asp missense variant moderate contig2621 340771

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.000
PHL-2 c.1670T>C p.Val557Ala missense variant moderate contig2621 340948

IGV: Start, Jump

T/C
NGS:
0.000
C90:
0.000
PHL-2 c.2578T>A p.Leu860Ile missense variant moderate contig2621 342621

IGV: Start, Jump

T/A
NGS:
0.068
C90:
0.746
PHL-2 c.2582C>G p.Pro861Arg missense variant moderate contig2621 342625

IGV: Start, Jump

C/G
NGS:
0.002
C90:
0.000
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PHL-2 c.2830A>G p.Asn944Asp missense variant moderate contig2621 342873

IGV: Start, Jump

A/G
NGS:
0.018
C90:
0.000
PHL-2 c.2834A>G p.Asn945Ser missense variant moderate contig2621 342877

IGV: Start, Jump

A/G
NGS:
0.004
C90:
0.000
PHL-2 c.2903_2905dupGCA p.Ser968dup disruptive inframe insertion moderate contig2621 342939

IGV: Start, Jump

T/TGCA
NGS:
0.018
C90:
0.522
PHL-2 c.3020T>A p.Ile1007Asn missense variant moderate contig2621 343063

IGV: Start, Jump

T/A
NGS:
0.000
C90:
0.000
PHL-2 c.3373A>G p.Thr1125Ala missense variant moderate contig2621 343416

IGV: Start, Jump

A/G
NGS:
0.009
C90:
0.110
PHL-2 c.3412T>A p.Ser1138Thr missense variant moderate contig2621 343455

IGV: Start, Jump

T/A
NGS:
0.000
C90:
0.000
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.544G>T p.Gly182Trp missense variant moderate contig700 2721129

IGV: Start, Jump

C/A
NGS:
0.055
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
ELF3

UniProt

c.2216A>G p.His739Arg missense variant moderate contig97 245047

IGV: Start, Jump

A/G
NGS:
0.020
C90:
0.182
HDS-2

UniProt

c.151G>T p.Ala51Ser missense variant moderate contig95 1989818

IGV: Start, Jump

G/T
NGS:
0.011
C90:
0.000
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.116
C90:
0.000
AAE1-2

UniProt

c.1061G>A p.Arg354Lys missense variant moderate contig81 210023

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.000
AAE1-2

UniProt

c.1102C>A p.His368Asn missense variant moderate contig81 210064

IGV: Start, Jump

C/A
NGS:
0.033
C90:
0.000
AAE1-2

UniProt

c.1115A>G p.Glu372Gly missense variant moderate contig81 210077

IGV: Start, Jump

A/G
NGS:
0.004
C90:
0.000
PHL-1

UniProt

c.2623A>G p.Thr875Ala missense variant moderate contig1439 1487174

IGV: Start, Jump

T/C
NGS:
0.123
C90:
0.000
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
Edestin

UniProt

c.230A>G p.Glu77Gly missense variant moderate contig850 3065060

IGV: Start, Jump

T/C
NGS:
0.000
C90:
0.000
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.099
C90:
0.861
HDS-1

UniProt

c.1381G>A p.Asp461Asn missense variant moderate contig1891 886367

IGV: Start, Jump

C/T
NGS:
0.029
C90:
0.000
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
PIE1-2

UniProt

c.5932A>G p.Ile1978Val missense variant moderate contig1460 1185552

IGV: Start, Jump

T/C
NGS:
0.061
C90:
0.268
EMF2

UniProt

c.1772A>G p.Gln591Arg missense variant moderate contig954 3059929

IGV: Start, Jump

A/G
NGS:
0.092
C90:
0.876
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.757G>T p.Val253Leu missense variant moderate contig121 2831364

IGV: Start, Jump

G/T
NGS:
0.039
C90:
0.000
FLD

UniProt

c.2981T>C p.Met994Thr missense variant moderate contig1450 2044012

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.478
FLD

UniProt

c.2686G>A p.Ala896Thr missense variant moderate contig1450 2044848

IGV: Start, Jump

C/T
NGS:
0.035
C90:
0.225
FLD

UniProt

c.2681T>C p.Ile894Thr missense variant moderate contig1450 2044853

IGV: Start, Jump

A/G
NGS:
0.020
C90:
0.144
AAE1-3

UniProt

c.634G>C p.Gly212Arg missense variant moderate contig976 1083220

IGV: Start, Jump

C/G
NGS:
0.116
C90:
0.000
AAE1-3

UniProt

c.382T>C p.Tyr128His missense variant moderate contig976 1083643

IGV: Start, Jump

A/G
NGS:
0.072
C90:
0.000
AAE1-3

UniProt

c.293A>G p.Asp98Gly missense variant moderate contig976 1083732

IGV: Start, Jump

T/C
NGS:
0.068
C90:
0.000
AAE1-3

UniProt

c.284A>T p.Glu95Val missense variant moderate contig976 1083741

IGV: Start, Jump

T/A
NGS:
0.053
C90:
0.000
AAE1-3

UniProt

c.214G>T p.Glu72* stop gained high contig976 1083861

IGV: Start, Jump

C/A
NGS:
0.009
C90:
0.000
AAE1-3

UniProt

c.181G>A p.Val61Ile missense variant moderate contig976 1083894

IGV: Start, Jump

C/T
NGS:
0.055
C90:
0.000
AAE1-3

UniProt

c.179C>T p.Thr60Ile missense variant moderate contig976 1083896

IGV: Start, Jump

G/A
NGS:
0.009
C90:
0.000
AAE1-3

UniProt

c.167A>G p.Glu56Gly missense variant moderate contig976 1083908

IGV: Start, Jump

T/C
NGS:
0.070
C90:
0.000
AAE1-3

UniProt

c.125A>G p.Glu42Gly missense variant moderate contig976 1083950

IGV: Start, Jump

T/C
NGS:
0.064
C90:
0.000
AAE1-3

UniProt

c.79A>G p.Thr27Ala missense variant moderate contig976 1083996

IGV: Start, Jump

T/C
NGS:
0.068
C90:
0.000
GGR

UniProt

c.32C>A p.Thr11Lys missense variant moderate contig2282 549024

IGV: Start, Jump

C/A
NGS:
0.009
C90:
0.000
GGR

UniProt

c.317C>T p.Pro106Leu missense variant moderate contig2282 549309

IGV: Start, Jump

C/T
NGS:
0.035
C90:
0.220
GGR

UniProt

c.358G>A p.Ala120Thr missense variant moderate contig2282 549350

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.000
GGR

UniProt

c.382C>T p.Leu128Phe missense variant moderate contig2282 549374

IGV: Start, Jump

C/T
NGS:
0.024
C90:
0.000
GGR

UniProt

c.456T>A p.His152Gln missense variant moderate contig2282 549448

IGV: Start, Jump

T/A
NGS:
0.068
C90:
0.000
GGR

UniProt

c.460G>A p.Asp154Asn missense variant moderate contig2282 549452

IGV: Start, Jump

G/A
NGS:
0.070
C90:
0.000
GGR

UniProt

c.541G>A p.Val181Ile missense variant moderate contig2282 549533

IGV: Start, Jump

G/A
NGS:
0.009
C90:
0.000
PKSB-3

UniProt

c.1652A>G p.Glu551Gly missense variant moderate contig93 3339759

IGV: Start, Jump

A/G
NGS:
0.088
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.147 IBR3 (SRR14708249)
  2. 0.170 IBR2 (SRR14708250)
  3. 0.180 Durban Poison 1 (RSP10996)
  4. 0.193 Lift (RSP11378)
  5. 0.212 IUP2 (SRR14708257)
  6. 0.213 BLACK JACK (RSP11346)
  7. 0.217 KYRG-11 (RSP11051)
  8. 0.218 Liberty Haze (RSP11000)
  9. 0.219 IUP1 (SRR14708258)
  10. 0.220 Doug s Varin (RSP11243)
  11. 0.221 Golden Goat 2 (RSP10991)
  12. 0.222 Durban Poison (RSP11014)
  13. 0.223 Blueberry Cheesecake (RSP10671)
  14. 0.224 Electra (RSP11366)
  15. 0.224 AOAC MI 599 (RSP11762)
  16. 0.224 Badger (RSP11614)
  17. 0.224 Tygra (RSP10667)
  18. 0.224 Hermaphrodite ResearchSample2 (RSP11050)
  19. 0.226 AOAC MI 542 (RSP11755)
  20. 0.228 Serious Happiness (RSP10763)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.163 KYRG-11 (RSP11051)
  2. 0.220 Hermaphrodite ResearchSample2 (RSP11050)
  3. 0.220 Liberty Haze (RSP11000)
  4. 0.224 Durban Poison (RSP11014)
  5. 0.230 Tygra (RSP10667)
  6. 0.235 Golden Goat 2 (RSP10991)
  7. 0.235 Blueberry Cheesecake (RSP10684)
  8. 0.247 Tisza (RSP10659)
  9. 0.248 Kimbo Slice (RSP10997)
  10. 0.264 Pie Hoe (RSP11073)
  11. 0.266 Jiangji (RSP10653)
  12. 0.271 CST (RSP11002)
  13. 0.274 Gold Cracker (RSP11048)
  14. 0.276 RKM-2018-029 (RSP11121)
  15. 0.278 Hermaphrodite Research Sample1 (RSP11049)
  16. 0.278 RKM-2018-027 (RSP11119)
  17. 0.278 QUEEN JESUS (RSP10105)
  18. 0.278 Blueberry Cheesecake (RSP10680)
  19. 0.281 RKM-2018-018 (RSP11110)
  20. 0.284 Sour Raspberry (RSP10551)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.404 CS (RSP11208)
  2. 0.385 JL 3rd Gen Father (RSP11196)
  3. 0.384 Tiborszallasie (RSP11210)
  4. 0.384 Carmaleonte (RSP11207)
  5. 0.379 Monoica (RSP10241)
  6. 0.377 UP Sunset (RSP11256)
  7. 0.374 Chematonic Cannatonic x Chemdawg (RSP11394)
  8. 0.372 Italian Kiss (RSP10990)
  9. 0.372 Cherry Blossom (RSP11309)
  10. 0.371 Candy Kush (RSP11492)
  11. 0.370 Cherry Blossom (RSP11323)
  12. 0.370 Wife (RSP11148)
  13. 0.369 Diana (RSP10235)
  14. 0.366 JL 4th Gen 6 (RSP11200)
  15. 0.366 JL 4th Gen 1 (RSP11193)
  16. 0.366 Santhica 27 (RSP10665)
  17. 0.365 JL yellow (RSP11075)
  18. 0.364 Harlox (RSP11178)
  19. 0.362 Red Eye OG (RSP11190)
  20. 0.360 Chem 91 (RSP11185)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.396 JL yellow (RSP11075)
  2. 0.377 Monoica (RSP10241)
  3. 0.364 RKM-2018-022 (RSP11114)
  4. 0.351 Futura 75 (RSP10664)
  5. 0.349 Fedora 17 (RSP10661)
  6. 0.346 Black Beauty (RSP11035)
  7. 0.341 RKM-2018-006 (RSP11097)
  8. 0.335 RKM-2018-002 (RSP11093)
  9. 0.335 Italian Kiss (RSP11034)
  10. 0.333 RKM-2018-034 (RSP11126)
  11. 0.332 RKM-2018-003 (RSP11094)
  12. 0.332 Santhica27 (RSP11047)
  13. 0.332 Kyrgyz Gold (RSP11054)
  14. 0.331 RKM-2018-023 (RSP11115)
  15. 0.326 Carmagnola (RSP10979)
  16. 0.326 Cbot-2019-005 (RSP11133)
  17. 0.325 Kush Hemp E1 (RSP11128)
  18. 0.324 Ivory (RSP10668)
  19. 0.321 Skywalker OG (RSP10837)
  20. 0.318 RKM-2018-020 (RSP11112)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450142
Overlapping SNPs:
12
Concordance:
11

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495178
Overlapping SNPs:
4
Concordance:
4
QR code for SRR14708251

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