B52

SRR 14708255

Grower: Lanzhou University, Guangpeng Ren

General Information

Accession Date
May 31, 2021
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.32%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0171
male female SRR14708255

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)

ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
aPT4

UniProt

c.35A>C p.Gln12Pro missense variant moderate contig121 2828691

IGV: Start, Jump

A/C
NGS:
0.075
C90:
0.000
AAE1-3

UniProt

c.722G>A p.Arg241Lys missense variant moderate contig976 1083132

IGV: Start, Jump

C/T
NGS:
0.070
C90:
0.000
AAE1-3

UniProt

c.199A>G p.Asn67Asp missense variant moderate contig976 1083876

IGV: Start, Jump

T/C
NGS:
0.079
C90:
0.000
AAE1-3

UniProt

c.188A>G p.Asn63Ser missense variant moderate contig976 1083887

IGV: Start, Jump

T/C
NGS:
0.077
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.033 0.067 0.100 0.133
clone distance sibling distance more distant
  1. 0.011 Alpine Rocket (SRR14708266)
  2. 0.025 AOAC MI 548 (RSP11757)
  3. 0.025 AOAC MI 504 (RSP11749)
  4. 0.025 AOAC MI 599 (RSP11762)
  5. 0.033 AOAC MI 569 (RSP11759)
  6. 0.033 AOAC MI 501 (RSP11748)
  7. 0.034 AOAC MI 542 (RSP11755)
  8. 0.034 AOAC MI 597 (RSP11761)
  9. 0.034 AOAC MI 508 (RSP11750)
  10. 0.034 AOAC MI 545 (RSP11756)
  11. 0.034 AOAC MI 588 (RSP11760)
  12. 0.036 AOAC MI 533 (RSP11753)
  13. 0.036 AOAC MI 535 (RSP11754)
  14. 0.036 AOAC MI 567 (RSP11758)
  15. 0.042 AOAC MI 532 (RSP11752)
  16. 0.048 Blue Dream (RSP11004)
  17. 0.054 Electra (RSP11366)
  18. 0.055 Doug s Varin (RSP11243)
  19. 0.069 Serious Happiness (RSP10763)
  20. 0.071 Lifter (RSP11365)

Nearest genetic relatives (Base Tree)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.092 Liberty Haze (RSP11000)
  2. 0.133 RKM-2018-009 (RSP11100)
  3. 0.141 UP Sunrise (RSP10989)
  4. 0.156 Blueberry Cheesecake (RSP10684)
  5. 0.167 Gold Cracker (RSP11048)
  6. 0.182 RKM-2018-005 (RSP11096)
  7. 0.184 Tisza (RSP10659)
  8. 0.192 Cbot-2019-001 (RSP11129)
  9. 0.195 Hermaphrodite Research Sample1 (RSP11049)
  10. 0.195 RKM-2018-033 (RSP11125)
  11. 0.196 Kimbo Slice (RSP10997)
  12. 0.196 RKM-2018-031 (RSP11123)
  13. 0.197 KYRG-11 (RSP11051)
  14. 0.206 Italian Kiss (RSP11034)
  15. 0.206 Recon (RSP10755)
  16. 0.207 RKM-2018-020 (RSP11112)
  17. 0.210 Cbot-2019-006 (RSP11134)
  18. 0.211 Durban Poison (RSP11014)
  19. 0.211 Hermaphrodite ResearchSample2 (RSP11050)
  20. 0.213 Tygra (RSP10667)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.406 JL yellow (RSP11075)
  2. 0.377 80E (RSP11213)
  3. 0.373 JL 3rd Gen Mother (RSP11214)
  4. 0.365 Feral (RSP11205)
  5. 0.354 JL 3rd Gen Mother (RSP11197)
  6. 0.352 JL 4th Gen 5 (RSP11199)
  7. 0.342 JL 4th Gen 6 (RSP11200)
  8. 0.336 80E (RSP11211)
  9. 0.330 JL 4th Gen 4 (RSP11198)
  10. 0.324 Danny Noonan (RSP11070)
  11. 0.323 Red Eye OG (RSP11190)
  12. 0.319 Tanao Sri-white 80 (RSP11621)
  13. 0.318 Feral (RSP10891)
  14. 0.314 CS (RSP11208)
  15. 0.313 Cbot-2019-005 (RSP11133)
  16. 0.311 Unknown- Cherry Wine - 001 (RSP11268)
  17. 0.310 USO31 (RSP10233)
  18. 0.308 JL 4th Gen 1 (RSP11193)
  19. 0.304 R1in136 (SRR14708226)
  20. 0.303 Fedora 17 (RSP10661)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.411 JL yellow (RSP11075)
  2. 0.351 Cbot-2019-005 (RSP11133)
  3. 0.315 Carmagnola (RSP10979)
  4. 0.312 Skywalker OG (RSP10837)
  5. 0.310 Fedora 17 (RSP10661)
  6. 0.304 RKM-2018-026 (RSP11118)
  7. 0.302 Black Beauty (RSP11035)
  8. 0.288 RKM-2018-034 (RSP11126)
  9. 0.282 Feral (RSP10890)
  10. 0.275 Ivory (RSP10668)
  11. 0.274 Santhica27 (RSP11047)
  12. 0.268 Monoica (RSP10241)
  13. 0.265 Futura 75 (RSP10664)
  14. 0.263 Carmagnola (RSP11037)
  15. 0.256 Cherry (RSP11142)
  16. 0.250 Kush Hemp E1 (RSP11128)
  17. 0.250 Kyrgyz Gold (RSP11054)
  18. 0.250 CST (RSP11002)
  19. 0.247 QUEEN JESUS (RSP10105)
  20. 0.246 Cbot-2019-004 (RSP11132)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448247
Overlapping SNPs:
6
Concordance:
6

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495174
Overlapping SNPs:
4
Concordance:
4
QR code for SRR14708255

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