IUP2
SRR 14708257
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.885G>A | p.Met295Ile | missense variant & splice region variant | moderate | contig676 | 169675 | G/A |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
GPPs1 |
c.923_927+2d |
p.Val308fs | frameshift variant & splice donor variant & splice region variant & intron variant | high | contig676 | 169798 | GTTTTGGT/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1364A>G | p.Asp455Gly | missense variant | moderate | contig2621 | 340642 | A/G |
|
PHL-2 | c.1381T>G | p.Phe461Val | missense variant | moderate | contig2621 | 340659 | T/G |
|
PHL-2 | c.1438C>G | p.Leu480Val | missense variant | moderate | contig2621 | 340716 | C/G |
|
PHL-2 | c.1450G>A | p.Glu484Lys | missense variant | moderate | contig2621 | 340728 | G/A |
|
PHL-2 | c.1493G>A | p.Gly498Asp | missense variant | moderate | contig2621 | 340771 | G/A |
|
PHL-2 | c.2582C>G | p.Pro861Arg | missense variant | moderate | contig2621 | 342625 | C/G |
|
PHL-2 | c.2834A>G | p.Asn945Ser | missense variant | moderate | contig2621 | 342877 | A/G |
|
PHL-2 | c.3020T>A | p.Ile1007Asn | missense variant | moderate | contig2621 | 343063 | T/A |
|
PHL-2 | c.3373A>G | p.Thr1125Ala | missense variant | moderate | contig2621 | 343416 | A/G | |
PKSG-4b |
c.535_545del |
p.Ile179fs | frameshift variant | high | contig700 | 2721127 |
CCCCACTCCAAT |
|
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PHL-1 | c.407G>A | p.Arg136Gln | missense variant | moderate | contig1439 | 1491441 | C/T | |
PHL-1 | c.176G>A | p.Gly59Glu | missense variant | moderate | contig1439 | 1492817 | C/T |
|
PHL-1 | c.175G>A | p.Gly59Arg | missense variant | moderate | contig1439 | 1492818 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1delATA | p.Met1del | start lost & conservative inframe deletion | high | contig700 | 1951880 | ATAT/A |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1381G>A | p.Asp461Asn | missense variant | moderate | contig1891 | 886367 | C/T |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.6773T>C | p.Leu2258Ser | missense variant | moderate | contig1460 | 1184314 | A/G | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
FLD | c.2962G>A | p.Asp988Asn | missense variant | moderate | contig1450 | 2044031 | C/T |
|
FLD | c.2840A>G | p.Asn947Ser | missense variant | moderate | contig1450 | 2044192 | T/C |
|
FLD | c.2585G>A | p.Arg862Gln | missense variant | moderate | contig1450 | 2045075 | C/T |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.260T>C | p.Val87Ala | missense variant | moderate | contig976 | 1083765 | A/G |
|
AAE1-3 | c.233C>G | p.Ser78Cys | missense variant | moderate | contig976 | 1083842 | G/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.8C>T | p.Ser3Leu | missense variant | moderate | contig976 | 1084067 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.188A>T | p.Tyr63Phe | missense variant | moderate | contig93 | 3333945 | A/T |
|
PKSB-3 | c.1901C>G | p.Ala634Gly | missense variant | moderate | contig93 | 3340008 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.143 IUP1 (SRR14708258)
- 0.145 Blue Dream (RSP11004)
- 0.164 Electra (RSP11366)
- 0.168 IUP3 (SRR14708256)
- 0.174 Lift (RSP11378)
- 0.188 Blue Dream (RSP11006)
- 0.192 Rest (RSP11377)
- 0.197 Joy (RSP11380)
- 0.207 Suver Haze (RSP11364)
- 0.211 IBR2 (SRR14708250)
- 0.212 IBR1 (SRR14708251)
- 0.214 Super Blue Dream (RSP11011)
- 0.216 B52 (SRR14708255)
- 0.218 IBR3 (SRR14708249)
- 0.219 Serious Happiness (RSP10763)
- 0.220 Lifter (RSP11365)
- 0.221 Hermaphrodite ResearchSample2 (RSP11050)
- 0.221 Trump x Trump (RSP11466)
- 0.224 Liberty Haze (RSP10946)
- 0.224 Calm (RSP11379)
Nearest genetic relatives (Base Tree)
- 0.245 Hermaphrodite ResearchSample2 (RSP11050)
- 0.270 Golden Goat 2 (RSP10991)
- 0.284 Gold Cracker (RSP11048)
- 0.304 Recon (RSP10755)
- 0.307 Jiangji (RSP10653)
- 0.307 Lovrin (RSP10658)
- 0.313 Tisza (RSP10659)
- 0.313 RKM-2018-023 (RSP11115)
- 0.315 Cbot-2019-006 (RSP11134)
- 0.318 RKM-2018-029 (RSP11121)
- 0.319 Liberty Haze (RSP11000)
- 0.321 Cbot-2019-004 (RSP11132)
- 0.323 Skunk 18 (RSP11038)
- 0.323 QUEEN JESUS (RSP10105)
- 0.324 Santhica27 (RSP11047)
- 0.327 RKM-2018-022 (RSP11114)
- 0.328 Cbot-2019-005 (RSP11133)
- 0.329 RKM-2018-020 (RSP11112)
- 0.330 RKM-2018-003 (RSP11094)
- 0.331 USO 31 (RSP10981)
Most genetically distant strains (All Samples)
- 0.444 Chem 91 (RSP11185)
- 0.442 CS (RSP11208)
- 0.432 RKM-2018-002 (RSP11093)
- 0.417 Red Eye OG (RSP11190)
- 0.413 Feral (RSP11206)
- 0.405 501st OG (RSP11241)
- 0.404 Sour Tsunami x Cataract Ku (RSP11183)
- 0.400 JL yellow (RSP11075)
- 0.400 JL 4th Gen 1 (RSP11193)
- 0.399 RKM-2018-012 (RSP11103)
- 0.398 The Gift (RSP10988)
- 0.396 JL 2 (RSP11076)
- 0.395 Ivory (RSP10668)
- 0.395 Carmagnola (RSP10976)
- 0.390 Carmagnola (RSP11202)
- 0.390 Skywalker OG (RSP10837)
- 0.388 Santhica27 (RSP10056)
- 0.388 RKM-2018-026 (RSP11118)
- 0.387 Danny Noonan (RSP11070)
- 0.387 Center Mark (RSP11629)
Most genetically distant strains (Base Tree)
- 0.460 Ivory (RSP10668)
- 0.438 JL yellow (RSP11075)
- 0.428 RKM-2018-002 (RSP11093)
- 0.415 The Gift (RSP10988)
- 0.398 Skywalker OG (RSP10837)
- 0.397 Feral (RSP10890)
- 0.396 RKM-2018-034 (RSP11126)
- 0.386 Blueberry Cheesecake (RSP10680)
- 0.386 Carmagnola (RSP10979)
- 0.383 Blue Dream (RSP11033)
- 0.381 Kyrgyz Gold (RSP11054)
- 0.381 Kimbo Slice (RSP10997)
- 0.375 KYRG-11 (RSP11051)
- 0.374 RKM-2018-031 (RSP11123)
- 0.372 Pie Hoe (RSP11073)
- 0.372 Italian Kiss (RSP11034)
- 0.370 RKM-2018-009 (RSP11100)
- 0.365 Durban Poison (RSP11014)
- 0.364 RKM-2018-028 (RSP11120)
- 0.364 CST (RSP11002)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4