IUP2

SRR 14708257

Grower: Lanzhou University, Guangpeng Ren

General Information

Accession Date
May 31, 2021
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.16%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0240
male female SRR14708257

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

GPPs1

UniProt

c.845_848delAAAG p.Glu282fs frameshift variant high contig676 169629

IGV: Start, Jump

TGAAA/T
NGS:
0.118
C90:
0.000
GPPs1

UniProt

c.885G>A p.Met295Ile missense variant & splice region variant moderate contig676 169675

IGV: Start, Jump

G/A
NGS:
0.002
C90:
0.000
GPPs1

UniProt

c.896A>G p.Asn299Ser missense variant moderate contig676 169772

IGV: Start, Jump

A/G
NGS:
0.046
C90:
0.000
GPPs1

UniProt

c.923_927+2delTTTTGGT p.Val308fs frameshift variant & splice donor variant & splice region variant & intron variant high contig676 169798

IGV: Start, Jump

GTTTTGGT/G
NGS:
0.000
C90:
0.000
EMF1-2

UniProt

c.710A>C p.His237Pro missense variant moderate contig885 810

IGV: Start, Jump

A/C
NGS:
0.090
C90:
0.474
PHL-2 c.932T>C p.Leu311Pro missense variant moderate contig2621 340210

IGV: Start, Jump

T/C
NGS:
0.039
C90:
0.268
PHL-2 c.1364A>G p.Asp455Gly missense variant moderate contig2621 340642

IGV: Start, Jump

A/G
NGS:
0.000
C90:
0.000
PHL-2 c.1381T>G p.Phe461Val missense variant moderate contig2621 340659

IGV: Start, Jump

T/G
NGS:
0.000
C90:
0.000
PHL-2 c.1438C>G p.Leu480Val missense variant moderate contig2621 340716

IGV: Start, Jump

C/G
NGS:
0.000
C90:
0.000
PHL-2 c.1450G>A p.Glu484Lys missense variant moderate contig2621 340728

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.000
PHL-2 c.1493G>A p.Gly498Asp missense variant moderate contig2621 340771

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.000
PHL-2 c.2582C>G p.Pro861Arg missense variant moderate contig2621 342625

IGV: Start, Jump

C/G
NGS:
0.002
C90:
0.000
PHL-2 c.2834A>G p.Asn945Ser missense variant moderate contig2621 342877

IGV: Start, Jump

A/G
NGS:
0.004
C90:
0.000
PHL-2 c.3020T>A p.Ile1007Asn missense variant moderate contig2621 343063

IGV: Start, Jump

T/A
NGS:
0.000
C90:
0.000
PHL-2 c.3373A>G p.Thr1125Ala missense variant moderate contig2621 343416

IGV: Start, Jump

A/G
NGS:
0.009
C90:
0.110
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.070
C90:
0.689
PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
ELF3

UniProt

c.574A>G p.Asn192Asp missense variant moderate contig97 242280

IGV: Start, Jump

A/G
NGS:
0.042
C90:
0.579
aPT1

UniProt

c.727G>T p.Glu243* stop gained high contig121 2841362

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.100
AAE1-2

UniProt

c.331A>G p.Asn111Asp missense variant moderate contig81 209293

IGV: Start, Jump

A/G
NGS:
0.123
C90:
0.000
AAE1-2

UniProt

c.374A>G p.His125Arg missense variant moderate contig81 209336

IGV: Start, Jump

A/G
NGS:
0.026
C90:
0.000
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.116
C90:
0.000
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
PHL-1

UniProt

c.407G>A p.Arg136Gln missense variant moderate contig1439 1491441

IGV: Start, Jump

C/T
NGS:
0.024
C90:
0.139
PHL-1

UniProt

c.176G>A p.Gly59Glu missense variant moderate contig1439 1492817

IGV: Start, Jump

C/T
NGS:
0.024
C90:
0.000
PHL-1

UniProt

c.175G>A p.Gly59Arg missense variant moderate contig1439 1492818

IGV: Start, Jump

C/T
NGS:
0.024
C90:
0.144
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1delATA p.Met1del start lost & conservative inframe deletion high contig700 1951880

IGV: Start, Jump

ATAT/A
NGS:
0.009
C90:
0.000
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.099
C90:
0.861
HDS-1

UniProt

c.1381G>A p.Asp461Asn missense variant moderate contig1891 886367

IGV: Start, Jump

C/T
NGS:
0.029
C90:
0.000
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943
HDS-1

UniProt

c.35G>A p.Cys12Tyr missense variant moderate contig1891 889357

IGV: Start, Jump

C/T
NGS:
0.094
C90:
0.646
PIE1-2

UniProt

c.6773T>C p.Leu2258Ser missense variant moderate contig1460 1184314

IGV: Start, Jump

A/G
NGS:
0.046
C90:
0.675
PIE1-2

UniProt

c.5932A>G p.Ile1978Val missense variant moderate contig1460 1185552

IGV: Start, Jump

T/C
NGS:
0.061
C90:
0.268
FLD

UniProt

c.2962G>A p.Asp988Asn missense variant moderate contig1450 2044031

IGV: Start, Jump

C/T
NGS:
0.009
C90:
0.000
FLD

UniProt

c.2840A>G p.Asn947Ser missense variant moderate contig1450 2044192

IGV: Start, Jump

T/C
NGS:
0.007
C90:
0.000
FLD

UniProt

c.2585G>A p.Arg862Gln missense variant moderate contig1450 2045075

IGV: Start, Jump

C/T
NGS:
0.007
C90:
0.000
AAE1-3

UniProt

c.382T>C p.Tyr128His missense variant moderate contig976 1083643

IGV: Start, Jump

A/G
NGS:
0.072
C90:
0.000
AAE1-3

UniProt

c.260T>C p.Val87Ala missense variant moderate contig976 1083765

IGV: Start, Jump

A/G
NGS:
0.000
C90:
0.000
AAE1-3

UniProt

c.233C>G p.Ser78Cys missense variant moderate contig976 1083842

IGV: Start, Jump

G/C
NGS:
0.000
C90:
0.000
AAE1-3

UniProt

c.79A>G p.Thr27Ala missense variant moderate contig976 1083996

IGV: Start, Jump

T/C
NGS:
0.068
C90:
0.000
AAE1-3

UniProt

c.52G>A p.Gly18Ser missense variant moderate contig976 1084023

IGV: Start, Jump

C/T
NGS:
0.064
C90:
0.000
AAE1-3

UniProt

c.8C>T p.Ser3Leu missense variant moderate contig976 1084067

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.000
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.121
C90:
0.000
PKSB-3

UniProt

c.188A>T p.Tyr63Phe missense variant moderate contig93 3333945

IGV: Start, Jump

A/T
NGS:
0.002
C90:
0.000
PKSB-3

UniProt

c.1901C>G p.Ala634Gly missense variant moderate contig93 3340008

IGV: Start, Jump

C/G
NGS:
0.059
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.143 IUP1 (SRR14708258)
  2. 0.145 Blue Dream (RSP11004)
  3. 0.164 Electra (RSP11366)
  4. 0.168 IUP3 (SRR14708256)
  5. 0.174 Lift (RSP11378)
  6. 0.188 Blue Dream (RSP11006)
  7. 0.192 Rest (RSP11377)
  8. 0.197 Joy (RSP11380)
  9. 0.207 Suver Haze (RSP11364)
  10. 0.211 IBR2 (SRR14708250)
  11. 0.212 IBR1 (SRR14708251)
  12. 0.214 Super Blue Dream (RSP11011)
  13. 0.216 B52 (SRR14708255)
  14. 0.218 IBR3 (SRR14708249)
  15. 0.219 Serious Happiness (RSP10763)
  16. 0.220 Lifter (RSP11365)
  17. 0.221 Hermaphrodite ResearchSample2 (RSP11050)
  18. 0.221 Trump x Trump (RSP11466)
  19. 0.224 Liberty Haze (RSP10946)
  20. 0.224 Calm (RSP11379)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.245 Hermaphrodite ResearchSample2 (RSP11050)
  2. 0.270 Golden Goat 2 (RSP10991)
  3. 0.284 Gold Cracker (RSP11048)
  4. 0.304 Recon (RSP10755)
  5. 0.307 Jiangji (RSP10653)
  6. 0.307 Lovrin (RSP10658)
  7. 0.313 Tisza (RSP10659)
  8. 0.313 RKM-2018-023 (RSP11115)
  9. 0.315 Cbot-2019-006 (RSP11134)
  10. 0.318 RKM-2018-029 (RSP11121)
  11. 0.319 Liberty Haze (RSP11000)
  12. 0.321 Cbot-2019-004 (RSP11132)
  13. 0.323 Skunk 18 (RSP11038)
  14. 0.323 QUEEN JESUS (RSP10105)
  15. 0.324 Santhica27 (RSP11047)
  16. 0.327 RKM-2018-022 (RSP11114)
  17. 0.328 Cbot-2019-005 (RSP11133)
  18. 0.329 RKM-2018-020 (RSP11112)
  19. 0.330 RKM-2018-003 (RSP11094)
  20. 0.331 USO 31 (RSP10981)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.444 Chem 91 (RSP11185)
  2. 0.442 CS (RSP11208)
  3. 0.432 RKM-2018-002 (RSP11093)
  4. 0.417 Red Eye OG (RSP11190)
  5. 0.413 Feral (RSP11206)
  6. 0.405 501st OG (RSP11241)
  7. 0.404 Sour Tsunami x Cataract Ku (RSP11183)
  8. 0.400 JL yellow (RSP11075)
  9. 0.400 JL 4th Gen 1 (RSP11193)
  10. 0.399 RKM-2018-012 (RSP11103)
  11. 0.398 The Gift (RSP10988)
  12. 0.396 JL 2 (RSP11076)
  13. 0.395 Ivory (RSP10668)
  14. 0.395 Carmagnola (RSP10976)
  15. 0.390 Carmagnola (RSP11202)
  16. 0.390 Skywalker OG (RSP10837)
  17. 0.388 Santhica27 (RSP10056)
  18. 0.388 RKM-2018-026 (RSP11118)
  19. 0.387 Danny Noonan (RSP11070)
  20. 0.387 Center Mark (RSP11629)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.460 Ivory (RSP10668)
  2. 0.438 JL yellow (RSP11075)
  3. 0.428 RKM-2018-002 (RSP11093)
  4. 0.415 The Gift (RSP10988)
  5. 0.398 Skywalker OG (RSP10837)
  6. 0.397 Feral (RSP10890)
  7. 0.396 RKM-2018-034 (RSP11126)
  8. 0.386 Blueberry Cheesecake (RSP10680)
  9. 0.386 Carmagnola (RSP10979)
  10. 0.383 Blue Dream (RSP11033)
  11. 0.381 Kyrgyz Gold (RSP11054)
  12. 0.381 Kimbo Slice (RSP10997)
  13. 0.375 KYRG-11 (RSP11051)
  14. 0.374 RKM-2018-031 (RSP11123)
  15. 0.372 Pie Hoe (RSP11073)
  16. 0.372 Italian Kiss (RSP11034)
  17. 0.370 RKM-2018-009 (RSP11100)
  18. 0.365 Durban Poison (RSP11014)
  19. 0.364 RKM-2018-028 (RSP11120)
  20. 0.364 CST (RSP11002)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448680
Overlapping SNPs:
2
Concordance:
2

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495187
Overlapping SNPs:
4
Concordance:
4
QR code for SRR14708257

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