Northern Light
SRR 14708265
General Information
- Sample Name
- NLT
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
FAD2-2 | c.311C>A | p.Ala104Asp | missense variant | moderate | contig83 | 1803058 | G/T |
|
FAD2-2 | c.303G>T | p.Trp101Cys | missense variant | moderate | contig83 | 1803066 | C/A |
|
FAD2-2 | c.248C>G | p.Pro83Arg | missense variant | moderate | contig83 | 1803121 | G/C |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.688G>A | p.Asp230Asn | missense variant | moderate | contig81 | 209650 | G/A |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.1156T>G | p.Trp386Gly | missense variant | moderate | contig1460 | 1192242 | A/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.13C>G | p.Leu5Val | missense variant | moderate | contig1561 | 3124437 | C/G | |
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FT | c.259+1G>C | splice donor variant & intron variant | high | contig1561 | 3124684 | G/C |
|
|
FT |
c.421_422dup |
p.Leu142fs | frameshift variant | high | contig1561 | 3126659 | C/CTA |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | high | contig121 | 2831380 | AT/A |
|
AAE1-3 | c.659G>A | p.Arg220Gln | missense variant | moderate | contig976 | 1083195 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
Nearest genetic relatives (All Samples)
- 0.094 B52 (SRR14708255)
- 0.118 AOAC MI 504 (RSP11749)
- 0.121 Miss X (RSP10999)
- 0.122 AOAC MI 597 (RSP11761)
- 0.125 Blue Dream (RSP11007)
- 0.125 AOAC MI 535 (RSP11754)
- 0.127 Durban Poison 1 (RSP10996)
- 0.129 Lift (RSP11378)
- 0.129 AOAC MI 533 (RSP11753)
- 0.132 AOAC MI 569 (RSP11759)
- 0.132 AOAC MI 599 (RSP11762)
- 0.132 AOAC MI 545 (RSP11756)
- 0.133 Blue Dream (RSP11017)
- 0.135 AOAC MI 532 (RSP11752)
- 0.135 AOAC MI 588 (RSP11760)
- 0.136 Doug s Varin (RSP11243)
- 0.137 AOAC MI 548 (RSP11757)
- 0.138 AOAC MI 508 (RSP11750)
- 0.138 AOAC MI 567 (RSP11758)
- 0.139 AOAC MI 501 (RSP11748)
Nearest genetic relatives (Base Tree)
- 0.138 UP Sunrise (RSP10989)
- 0.140 Liberty Haze (RSP11000)
- 0.201 Tisza (RSP10659)
- 0.207 Recon (RSP10755)
- 0.211 The Gift (RSP10988)
- 0.226 Gold Cracker (RSP11048)
- 0.229 Hermaphrodite Research Sample1 (RSP11049)
- 0.237 Blueberry Cheesecake (RSP10680)
- 0.239 Blueberry Cheesecake (RSP10684)
- 0.241 KYRG-11 (RSP11051)
- 0.244 Kimbo Slice (RSP10997)
- 0.250 CST (RSP11002)
- 0.250 RKM-2018-009 (RSP11100)
- 0.252 Italian Kiss (RSP11034)
- 0.259 RKM-2018-031 (RSP11123)
- 0.260 Golden Goat 2 (RSP10991)
- 0.260 Pie Hoe (RSP11073)
- 0.260 Hermaphrodite ResearchSample2 (RSP11050)
- 0.261 Jiangji (RSP10653)
- 0.261 RKM-2018-023 (RSP11115)
Most genetically distant strains (All Samples)
- 0.407 JL 4th Gen 5 (RSP11199)
- 0.394 JL yellow (RSP11075)
- 0.384 Danny Noonan (RSP11070)
- 0.379 Feral (RSP11205)
- 0.378 Cherry Blossom (RSP11323)
- 0.370 JL 3rd Gen Mother (RSP11197)
- 0.363 80E (RSP11213)
- 0.361 Northern Lights (RSP11501)
- 0.354 JL 3rd Gen Mother (RSP11214)
- 0.353 Kush Hemp E1 (RSP11128)
- 0.352 Feral (RSP10891)
- 0.350 IUP3 (SRR14708256)
- 0.347 CS (RSP11208)
- 0.345 R3in134 (SRR14708220)
- 0.343 Santhica27 (RSP10056)
- 0.342 80E (RSP11212)
- 0.342 Tanao Sri-white 80 (RSP11621)
- 0.341 JL 4th Gen 1 (RSP11193)
- 0.341 80E (RSP11211)
- 0.341 JL 3rd Gen Father (RSP11196)
Most genetically distant strains (Base Tree)
- 0.401 JL yellow (RSP11075)
- 0.387 Carmagnola (RSP10979)
- 0.365 Kush Hemp E1 (RSP11128)
- 0.358 Monoica (RSP10241)
- 0.354 Cbot-2019-005 (RSP11133)
- 0.352 Fedora 17 (RSP10661)
- 0.349 Skywalker OG (RSP10837)
- 0.344 Cbot-2019-004 (RSP11132)
- 0.338 Ivory (RSP10668)
- 0.328 Santhica27 (RSP11047)
- 0.326 USO 31 (RSP10981)
- 0.321 RKM-2018-028 (RSP11120)
- 0.321 RKM-2018-003 (RSP11094)
- 0.318 RKM-2018-026 (RSP11118)
- 0.318 RKM-2018-020 (RSP11112)
- 0.318 RKM-2018-002 (RSP11093)
- 0.312 Carmagnola (RSP11037)
- 0.311 RKM-2018-034 (RSP11126)
- 0.302 Black Beauty (RSP11035)
- 0.301 RKM-2018-033 (RSP11125)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 11
- Concordance:
- 10
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4