Alpine Rocket
SRR 14708266
General Information
- Sample Name
- ART
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Unknown
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
AAE1-2 | c.688G>A | p.Asp230Asn | missense variant | moderate | contig81 | 209650 | G/A |
|
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
aPT4 | c.1111C>A | p.Leu371Ile | missense variant | moderate | contig121 | 2833296 | C/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.067 B52 (SRR14708255)
- 0.208 Jacks Cleaner (RSP11347)
- 0.221 Dave Pineapple (RSP11626)
- 0.224 Escape Velocity (RSP11165)
- 0.224 UP Sunrise (RSP10989)
- 0.225 Erez 05MAY2017 (RSP10942)
- 0.226 Liberty Haze (RSP10946)
- 0.227 Alaska USA (RSP11171)
- 0.234 Liberty Haze (RSP11000)
- 0.236 Tangerine Haze (RSP10995)
- 0.236 Wilburs Great Adventure (RSP11727)
- 0.237 OR 05MAY2017 (RSP10940)
- 0.239 Calm (RSP11379)
- 0.241 JL Cross 13 (RSP11514)
- 0.242 RKM-2018-030 (RSP11122)
- 0.242 Green Crack (RSP11339)
- 0.242 Master Kush (RSP11497)
- 0.243 MBD (RSP11368)
- 0.244 RKM-2018-010 (RSP11101)
- 0.244 Serious Happiness (RSP10763)
Nearest genetic relatives (Base Tree)
- 0.220 Liberty Haze (RSP11000)
- 0.227 UP Sunrise (RSP10989)
- 0.248 RKM-2018-028 (RSP11120)
- 0.255 Italian Kiss (RSP11034)
- 0.259 Hermaphrodite Research Sample1 (RSP11049)
- 0.264 RKM-2018-009 (RSP11100)
- 0.266 Gold Cracker (RSP11048)
- 0.267 Sour Raspberry (RSP10551)
- 0.277 RKM-2018-027 (RSP11119)
- 0.278 Cbot-2019-006 (RSP11134)
- 0.278 Blueberry Cheesecake (RSP10684)
- 0.278 RKM-2018-006 (RSP11097)
- 0.279 RKM-2018-018 (RSP11110)
- 0.279 RKM-2018-031 (RSP11123)
- 0.280 CST (RSP11002)
- 0.293 Blue Dream (RSP11033)
- 0.293 Cbot-2019-001 (RSP11129)
- 0.293 Queen Jesus (RSP10105)
- 0.295 RKM-2018-023 (RSP11115)
- 0.296 RKM-2018-022 (RSP11114)
Most genetically distant strains (All Samples)
- 0.478 Cherry Blossom (RSP11311)
- 0.476 Cherry Blossom (RSP11334)
- 0.465 Cherry Blossom (RSP11328)
- 0.461 Cherry Blossom (RSP11298)
- 0.450 Cherry Blossom (RSP11309)
- 0.449 Cherry Blossom (RSP11323)
- 0.443 BagSeed (RSP12627)
- 0.443 Cherry Blossom (RSP11314)
- 0.442 Unknown--Cherry Wine---003- (RSP11270)
- 0.440 Cherry Blossom (RSP11317)
- 0.439 Absolute OG (RSP11455)
- 0.435 Cherry Blossom (RSP11335)
- 0.435 Unknown--Cherry Wine---004- (RSP11271)
- 0.434 Tiger Tail -30- (RSP11484)
- 0.433 Unknown--Cherry Wine---001- (RSP11268)
- 0.432 Cherry Blossom (RSP11308)
- 0.428 BagSeed (RSP12501)
- 0.427 ILM (RSP12623)
- 0.424 Unknown--Cherry Wine---002- (RSP11269)
- 0.423 Cherry Blossom CBG (RSP11303)
Most genetically distant strains (Base Tree)
- 0.427 RKM-2018-034 (RSP11126)
- 0.418 Cbot-2019-005 (RSP11133)
- 0.411 Feral (RSP10890)
- 0.407 RKM-2018-026 (RSP11118)
- 0.405 Skywalker OG (RSP10837)
- 0.400 Monoica (RSP10241)
- 0.386 Carmagnola (RSP11037)
- 0.381 Futura 75 (RSP10664)
- 0.377 The Gift (RSP10988)
- 0.377 Santhica27 (RSP11047)
- 0.373 Ivory (RSP10668)
- 0.371 Tisza (RSP11044)
- 0.371 KYRG-11 (RSP11051)
- 0.370 Carmagnola (RSP10979)
- 0.369 JL yellow (RSP11075)
- 0.368 RKM-2018-002 (RSP11093)
- 0.367 Fedora 17 (RSP10661)
- 0.365 Kyrgyz Gold (RSP11054)
- 0.362 Kush Hemp E1 (RSP11128)
- 0.361 Kimbo Slice (RSP10997)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 9
- Concordance:
- 9
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2