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Alpine Rocket

SRR 14708266

Grower: Lanzhou University, Guangpeng Ren

General Information

Sample Name
ART
Accession Date
May 31, 2021
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Unknown

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.14%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0164
male female SRR14708266

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.885
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.229G>A p.Gly77Ser missense variant moderate contig700 2724206

IGV: Start, Jump

C/T
NGS:
0.042
C90:
0.000
PKSG-4b

UniProt

c.216G>C p.Leu72Phe missense variant moderate contig700 2724219

IGV: Start, Jump

C/G
NGS:
0.044
C90:
0.000
PKSG-4b

UniProt

c.206T>C p.Leu69Ser missense variant moderate contig700 2724229

IGV: Start, Jump

A/G
NGS:
0.044
C90:
0.000
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
ELF3

UniProt

c.1230-2_1230-1delAG splice acceptor variant & intron variant high contig97 243676

IGV: Start, Jump

TAG/T
NGS:
0.088
C90:
0.450
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
ELF3

UniProt

c.2141C>G p.Pro714Arg missense variant moderate contig97 244972

IGV: Start, Jump

C/G
NGS:
0.088
C90:
0.335
AAE1-2

UniProt

c.688G>A p.Asp230Asn missense variant moderate contig81 209650

IGV: Start, Jump

G/A
NGS:
0.018
C90:
0.000
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
aPT4

UniProt

c.1111C>A p.Leu371Ile missense variant moderate contig121 2833296

IGV: Start, Jump

C/A
NGS:
0.044
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
FLD

UniProt

c.2964C>A p.Asp988Glu missense variant moderate contig1450 2044029

IGV: Start, Jump

G/T
NGS:
0.057
C90:
0.464
AAE1-3

UniProt

c.634G>C p.Gly212Arg missense variant moderate contig976 1083220

IGV: Start, Jump

C/G
NGS:
0.116
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.067 B52 (SRR14708255)
  2. 0.208 Jacks Cleaner (RSP11347)
  3. 0.221 Dave Pineapple (RSP11626)
  4. 0.224 Escape Velocity (RSP11165)
  5. 0.224 UP Sunrise (RSP10989)
  6. 0.225 Erez 05MAY2017 (RSP10942)
  7. 0.226 Liberty Haze (RSP10946)
  8. 0.227 Alaska USA (RSP11171)
  9. 0.234 Liberty Haze (RSP11000)
  10. 0.236 Tangerine Haze (RSP10995)
  11. 0.236 Wilburs Great Adventure (RSP11727)
  12. 0.237 OR 05MAY2017 (RSP10940)
  13. 0.239 Calm (RSP11379)
  14. 0.241 JL Cross 13 (RSP11514)
  15. 0.242 RKM-2018-030 (RSP11122)
  16. 0.242 Green Crack (RSP11339)
  17. 0.242 Master Kush (RSP11497)
  18. 0.243 MBD (RSP11368)
  19. 0.244 RKM-2018-010 (RSP11101)
  20. 0.244 Serious Happiness (RSP10763)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.220 Liberty Haze (RSP11000)
  2. 0.227 UP Sunrise (RSP10989)
  3. 0.248 RKM-2018-028 (RSP11120)
  4. 0.255 Italian Kiss (RSP11034)
  5. 0.259 Hermaphrodite Research Sample1 (RSP11049)
  6. 0.264 RKM-2018-009 (RSP11100)
  7. 0.266 Gold Cracker (RSP11048)
  8. 0.267 Sour Raspberry (RSP10551)
  9. 0.277 RKM-2018-027 (RSP11119)
  10. 0.278 Cbot-2019-006 (RSP11134)
  11. 0.278 Blueberry Cheesecake (RSP10684)
  12. 0.278 RKM-2018-006 (RSP11097)
  13. 0.279 RKM-2018-018 (RSP11110)
  14. 0.279 RKM-2018-031 (RSP11123)
  15. 0.280 CST (RSP11002)
  16. 0.293 Blue Dream (RSP11033)
  17. 0.293 Cbot-2019-001 (RSP11129)
  18. 0.293 Queen Jesus (RSP10105)
  19. 0.295 RKM-2018-023 (RSP11115)
  20. 0.296 RKM-2018-022 (RSP11114)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.478 Cherry Blossom (RSP11311)
  2. 0.476 Cherry Blossom (RSP11334)
  3. 0.465 Cherry Blossom (RSP11328)
  4. 0.461 Cherry Blossom (RSP11298)
  5. 0.450 Cherry Blossom (RSP11309)
  6. 0.449 Cherry Blossom (RSP11323)
  7. 0.443 BagSeed (RSP12627)
  8. 0.443 Cherry Blossom (RSP11314)
  9. 0.442 Unknown--Cherry Wine---003- (RSP11270)
  10. 0.440 Cherry Blossom (RSP11317)
  11. 0.439 Absolute OG (RSP11455)
  12. 0.435 Cherry Blossom (RSP11335)
  13. 0.435 Unknown--Cherry Wine---004- (RSP11271)
  14. 0.434 Tiger Tail -30- (RSP11484)
  15. 0.433 Unknown--Cherry Wine---001- (RSP11268)
  16. 0.432 Cherry Blossom (RSP11308)
  17. 0.428 BagSeed (RSP12501)
  18. 0.427 ILM (RSP12623)
  19. 0.424 Unknown--Cherry Wine---002- (RSP11269)
  20. 0.423 Cherry Blossom CBG (RSP11303)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.427 RKM-2018-034 (RSP11126)
  2. 0.418 Cbot-2019-005 (RSP11133)
  3. 0.411 Feral (RSP10890)
  4. 0.407 RKM-2018-026 (RSP11118)
  5. 0.405 Skywalker OG (RSP10837)
  6. 0.400 Monoica (RSP10241)
  7. 0.386 Carmagnola (RSP11037)
  8. 0.381 Futura 75 (RSP10664)
  9. 0.377 The Gift (RSP10988)
  10. 0.377 Santhica27 (RSP11047)
  11. 0.373 Ivory (RSP10668)
  12. 0.371 Tisza (RSP11044)
  13. 0.371 KYRG-11 (RSP11051)
  14. 0.370 Carmagnola (RSP10979)
  15. 0.369 JL yellow (RSP11075)
  16. 0.368 RKM-2018-002 (RSP11093)
  17. 0.367 Fedora 17 (RSP10661)
  18. 0.365 Kyrgyz Gold (RSP11054)
  19. 0.362 Kush Hemp E1 (RSP11128)
  20. 0.361 Kimbo Slice (RSP10997)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448769
Overlapping SNPs:
9
Concordance:
9

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495169
Overlapping SNPs:
2
Concordance:
2
QR code for SRR14708266

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