Swaziland
SRR 14708271
General Information
- Sample Name
- SWD
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.44G>A | p.Arg15Lys | missense variant | moderate | contig2621 | 337613 | G/A | |
PHL-2 | c.1166C>T | p.Pro389Leu | missense variant | moderate | contig2621 | 340444 | C/T | |
PHL-2 | c.1577A>G | p.His526Arg | missense variant | moderate | contig2621 | 340855 | A/G |
|
PHL-2 | c.2582C>G | p.Pro861Arg | missense variant | moderate | contig2621 | 342625 | C/G |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.58C>T | p.His20Tyr | missense variant | moderate | contig83 | 1803311 | G/A |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
AAE1-2 | c.133T>A | p.Phe45Ile | missense variant | moderate | contig81 | 209095 | T/A |
|
AAE1-2 | c.311A>G | p.Asn104Ser | missense variant | moderate | contig81 | 209273 | A/G |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.1090A>G | p.Lys364Glu | missense variant | moderate | contig81 | 210052 | A/G |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1118C>G | p.Thr373Ser | missense variant | moderate | contig81 | 210080 | C/G |
|
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.231G>T | p.Glu77Asp | missense variant | moderate | contig850 | 3065059 | C/A |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1381G>A | p.Asp461Asn | missense variant | moderate | contig1891 | 886367 | C/T |
|
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
aPT4 | c.16G>A | p.Val6Ile | missense variant | moderate | contig121 | 2828672 | G/A |
|
aPT4 | c.80A>G | p.Lys27Arg | missense variant | moderate | contig121 | 2828736 | A/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2962G>A | p.Asp988Asn | missense variant | moderate | contig1450 | 2044031 | C/T |
|
FLD | c.2840A>G | p.Asn947Ser | missense variant | moderate | contig1450 | 2044192 | T/C |
|
FLD | c.2585G>A | p.Arg862Gln | missense variant | moderate | contig1450 | 2045075 | C/T |
|
AAE1-3 | c.722G>A | p.Arg241Lys | missense variant | moderate | contig976 | 1083132 | C/T |
|
AAE1-3 | c.659G>A | p.Arg220Gln | missense variant | moderate | contig976 | 1083195 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 | c.1901C>G | p.Ala634Gly | missense variant | moderate | contig93 | 3340008 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.132 Haze (SRR14708264)
- 0.248 RKM-2018-027 (RSP11119)
- 0.249 RKM-2018-006 (RSP11097)
- 0.251 JL 4th Gen 7 (RSP11153)
- 0.251 Blue Dream (RSP11007)
- 0.252 Blue Dream (RSP11017)
- 0.253 JL X NSPM1 12 (RSP11472)
- 0.254 Tangerine Haze (RSP10995)
- 0.254 Black Jack (RSP10603)
- 0.254 RKM-2018-011 (RSP11102)
- 0.255 RKM-2018-031 (RSP11123)
- 0.256 UP Sunrise (RSP10989)
- 0.257 Blue Dream (RSP11006)
- 0.258 Blue Dream (RSP11010)
- 0.258 Blue Dream (RSP11009)
- 0.259 Italian Kiss (RSP11034)
- 0.259 Italian Kiss (RSP10990)
- 0.260 Suver Haze (RSP11364)
- 0.261 RKM-2018-025 (RSP11117)
- 0.262 RKM-2018-016 (RSP11108)
Nearest genetic relatives (Base Tree)
- 0.248 RKM-2018-027 (RSP11119)
- 0.253 UP Sunrise (RSP10989)
- 0.255 RKM-2018-006 (RSP11097)
- 0.260 RKM-2018-031 (RSP11123)
- 0.264 Gold Cracker (RSP11048)
- 0.266 Recon (RSP10755)
- 0.268 Italian Kiss (RSP11034)
- 0.271 JL yellow (RSP11075)
- 0.284 Blue Dream (RSP11033)
- 0.284 Durban Poison (RSP11014)
- 0.285 Liberty Haze (RSP11000)
- 0.288 Blueberry Cheesecake (RSP10684)
- 0.291 CST (RSP11002)
- 0.292 Tygra (RSP10667)
- 0.294 RKM-2018-003 (RSP11094)
- 0.305 Blueberry Cheesecake (RSP10672)
- 0.307 RKM-2018-023 (RSP11115)
- 0.308 Queen Jesus (RSP10105)
- 0.318 Jiangji (RSP10653)
- 0.319 KYRG-11 (RSP11051)
Most genetically distant strains (All Samples)
- 0.458 CHEM4 (RSP12090)
- 0.455 Fatso (RSP11741)
- 0.447 RKM-2018-012 (RSP11103)
- 0.442 Absolute OG (RSP11455)
- 0.439 Cherry Blossom (RSP11311)
- 0.435 Cherry Lime Runtz (RSP12486)
- 0.434 Red Eye OG (RSP11190)
- 0.434 Cherry Blossom (RSP11318)
- 0.431 JL Cross 6 (RSP11507)
- 0.431 Unknown--Cherry Wine---001- (RSP11268)
- 0.429 Right Mark (RSP11628)
- 0.427 GMO x Poison Momosa (RSP12626)
- 0.427 Chem 91 (RSP11185)
- 0.426 Cherry Blossom (RSP11335)
- 0.425 Cherry Blossom (RSP11308)
- 0.425 Cherry Blossom (RSP11334)
- 0.425 Deadhead OG (RSP11463)
- 0.424 East side OG (RSP12089)
- 0.424 GMO x Garlic Breath (RSP12507)
- 0.423 New BSR (RSP12104)
Most genetically distant strains (Base Tree)
- 0.428 RKM-2018-002 (RSP11093)
- 0.423 RKM-2018-026 (RSP11118)
- 0.417 Cbot-2019-005 (RSP11133)
- 0.413 Skywalker OG (RSP10837)
- 0.411 Kush Hemp E1 (RSP11128)
- 0.381 Cherry (RSP11142)
- 0.381 RKM-2018-004 (RSP11096)
- 0.379 RKM-2018-034 (RSP11126)
- 0.376 RKM-2018-033 (RSP11125)
- 0.376 RKM-2018-028 (RSP11120)
- 0.371 RKM-2018-032 (RSP11124)
- 0.371 Santhica27 (RSP11047)
- 0.368 Pie Hoe (RSP11073)
- 0.367 Feral (RSP10890)
- 0.365 RKM-2018-019 (RSP11111)
- 0.358 Fedora 17 (RSP10661)
- 0.357 Monoica (RSP10241)
- 0.355 USO 31 (RSP10981)
- 0.354 Blueberry Cheesecake (RSP10680)
- 0.352 Futura 75 (RSP10664)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 8
- Concordance:
- 8
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5