Swaziland
SRR 14708271
General Information
- Sample Name
- SWD
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.44G>A | p.Arg15Lys | missense variant | moderate | contig2621 | 337613 | G/A | |
PHL-2 | c.1166C>T | p.Pro389Leu | missense variant | moderate | contig2621 | 340444 | C/T | |
PHL-2 | c.1577A>G | p.His526Arg | missense variant | moderate | contig2621 | 340855 | A/G |
|
PHL-2 | c.2582C>G | p.Pro861Arg | missense variant | moderate | contig2621 | 342625 | C/G |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.58C>T | p.His20Tyr | missense variant | moderate | contig83 | 1803311 | G/A |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
AAE1-2 | c.133T>A | p.Phe45Ile | missense variant | moderate | contig81 | 209095 | T/A |
|
AAE1-2 | c.311A>G | p.Asn104Ser | missense variant | moderate | contig81 | 209273 | A/G |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.1090A>G | p.Lys364Glu | missense variant | moderate | contig81 | 210052 | A/G |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1118C>G | p.Thr373Ser | missense variant | moderate | contig81 | 210080 | C/G |
|
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.231G>T | p.Glu77Asp | missense variant | moderate | contig850 | 3065059 | C/A |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1381G>A | p.Asp461Asn | missense variant | moderate | contig1891 | 886367 | C/T |
|
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
aPT4 | c.16G>A | p.Val6Ile | missense variant | moderate | contig121 | 2828672 | G/A |
|
aPT4 | c.80A>G | p.Lys27Arg | missense variant | moderate | contig121 | 2828736 | A/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2962G>A | p.Asp988Asn | missense variant | moderate | contig1450 | 2044031 | C/T |
|
FLD | c.2840A>G | p.Asn947Ser | missense variant | moderate | contig1450 | 2044192 | T/C |
|
FLD | c.2585G>A | p.Arg862Gln | missense variant | moderate | contig1450 | 2045075 | C/T |
|
AAE1-3 | c.722G>A | p.Arg241Lys | missense variant | moderate | contig976 | 1083132 | C/T |
|
AAE1-3 | c.659G>A | p.Arg220Gln | missense variant | moderate | contig976 | 1083195 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 | c.1901C>G | p.Ala634Gly | missense variant | moderate | contig93 | 3340008 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.108 Haze (SRR14708264)
- 0.123 Blue Dream (RSP11006)
- 0.146 Super Blue Dream (RSP11011)
- 0.157 AOAC MI 508 (RSP11750)
- 0.157 AOAC MI 532 (RSP11752)
- 0.157 AOAC MI 533 (RSP11753)
- 0.159 AOAC MI 545 (RSP11756)
- 0.160 Serious Happiness (RSP10763)
- 0.161 Suver Haze (RSP11364)
- 0.163 AOAC MI 597 (RSP11761)
- 0.163 AOAC MI 588 (RSP11760)
- 0.165 B52 (SRR14708255)
- 0.168 Doug s Varin (RSP11243)
- 0.169 AOAC MI 548 (RSP11757)
- 0.169 AOAC MI 504 (RSP11749)
- 0.169 Lift (RSP11378)
- 0.170 Durban Poison 1 (RSP11013)
- 0.170 Electra (RSP11366)
- 0.171 AOAC MI 542 (RSP11755)
- 0.171 Blue Dream (RSP11017)
Nearest genetic relatives (Base Tree)
- 0.153 UP Sunrise (RSP10989)
- 0.179 Liberty Haze (RSP11000)
- 0.217 Gold Cracker (RSP11048)
- 0.217 RKM-2018-031 (RSP11123)
- 0.233 Durban Poison (RSP11014)
- 0.233 Italian Kiss (RSP11034)
- 0.243 RKM-2018-009 (RSP11100)
- 0.246 RKM-2018-027 (RSP11119)
- 0.248 RKM-2018-006 (RSP11097)
- 0.253 Blue Dream (RSP11033)
- 0.253 Blueberry Cheesecake (RSP10672)
- 0.259 Tygra (RSP10667)
- 0.265 QUEEN JESUS (RSP10105)
- 0.265 Cbot-2019-004 (RSP11132)
- 0.265 CST (RSP11002)
- 0.267 Recon (RSP10755)
- 0.270 Hermaphrodite ResearchSample2 (RSP11050)
- 0.271 Cherry (RSP11142)
- 0.272 Blueberry Cheesecake (RSP10684)
- 0.277 Cherry (RSP11143)
Most genetically distant strains (All Samples)
- 0.420 Feral (RSP11205)
- 0.419 Tanao Sri-white 80 (RSP11621)
- 0.417 R1in136 (SRR14708226)
- 0.415 CS (RSP11208)
- 0.410 80E (RSP11213)
- 0.382 Red Eye OG (RSP11190)
- 0.380 Tiborszallasie (RSP11210)
- 0.376 80E (RSP11211)
- 0.373 Cherry Blossom (RSP11323)
- 0.372 80E (RSP11212)
- 0.370 RKM-2018-012 (RSP11103)
- 0.369 Skywalker OG (RSP10837)
- 0.368 JL Cross 6 (RSP11507)
- 0.367 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.363 RKM-2018-026 (RSP11118)
- 0.361 RKM-2018-002 (RSP11093)
- 0.360 Right Mark (RSP11628)
- 0.360 Northern Lights (RSP11501)
- 0.358 Tanao Sri-white-T1 (RSP11658)
- 0.358 SFVxTK (RSP11072)
Most genetically distant strains (Base Tree)
- 0.388 Fedora 17 (RSP10661)
- 0.364 RKM-2018-026 (RSP11118)
- 0.353 JL yellow (RSP11075)
- 0.347 Skywalker OG (RSP10837)
- 0.347 RKM-2018-002 (RSP11093)
- 0.343 Skunk 18 (RSP11038)
- 0.341 Cbot-2019-005 (RSP11133)
- 0.339 Kush Hemp E1 (RSP11128)
- 0.333 RKM-2018-018 (RSP11110)
- 0.333 Kyrgyz Gold (RSP11054)
- 0.333 Lovrin (RSP10658)
- 0.332 Futura 75 (RSP10664)
- 0.328 Ivory (RSP10668)
- 0.324 Carmagnola (RSP11037)
- 0.323 Feral (RSP10890)
- 0.314 RKM-2018-005 (RSP11096)
- 0.314 The Gift (RSP10988)
- 0.313 Carmagnola (RSP10979)
- 0.311 RKM-2018-022 (RSP11114)
- 0.310 Tisza (RSP10659)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 8
- Concordance:
- 8
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5