Fibranova
SRR 14708276
General Information
- Sample Name
- IFA
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.242G>A | p.Arg81Lys | missense variant | moderate | contig885 | 342 | G/A |
|
EMF1-2 | c.2321C>T | p.Ser774Leu | missense variant | moderate | contig885 | 3207 | C/T |
|
EMF1-2 | c.2483G>C | p.Ser828Thr | missense variant | moderate | contig885 | 3369 | G/C |
|
PHL-2 | c.44G>A | p.Arg15Lys | missense variant | moderate | contig2621 | 337613 | G/A | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-2a |
c.-22_2delTA |
p.Met1del | start lost & conservative inframe deletion | high | contig700 | 1945631 |
CATATTATTATT |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
ELF4 | c.144T>A | p.Asp48Glu | missense variant | moderate | contig869 | 622426 | A/T |
|
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
aPT1 | c.574A>T | p.Met192Leu | missense variant | moderate | contig121 | 2840182 | A/T |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 |
c.947_948ins |
p.Asp317fs | frameshift variant | high | contig81 | 209908 | C/CATAG |
|
AAE1-2 |
c.950_954del |
p.Asp317fs | frameshift variant | high | contig81 | 209911 | GACCAA/G |
|
AAE1-2 |
c.955_956ins |
p.Arg319fs | frameshift variant | high | contig81 | 209917 | C/CT |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.109G>A | p.Val37Ile | missense variant | moderate | contig1891 | 889283 | C/T |
|
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
PIE1-2 | c.1846A>G | p.Lys616Glu | missense variant | moderate | contig1460 | 1190278 | T/C |
|
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT |
c.413_413+1i |
splice donor variant & intron variant | high | contig1561 | 3126450 | T/TGTATGCA |
|
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 | c.517A>T | p.Ile173Leu | missense variant & splice region variant | moderate | contig121 | 2830795 | A/T |
|
aPT4 | c.916C>T | p.His306Tyr | missense variant & splice region variant | moderate | contig121 | 2832711 | C/T |
|
aPT4 | c.920G>A | p.Gly307Asp | missense variant | moderate | contig121 | 2832715 | G/A |
|
AAE1-3 | c.722G>A | p.Arg241Lys | missense variant | moderate | contig976 | 1083132 | C/T |
|
AAE1-3 | c.659G>A | p.Arg220Gln | missense variant | moderate | contig976 | 1083195 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.215A>T | p.Glu72Val | missense variant | moderate | contig976 | 1083860 | T/A |
|
AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
|
AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.141A>G | p.Ile47Met | missense variant | moderate | contig976 | 1083934 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
GGR | c.11A>C | p.Asn4Thr | missense variant | moderate | contig2282 | 549003 | A/C |
|
GGR | c.362A>T | p.Tyr121Phe | missense variant | moderate | contig2282 | 549354 | A/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.541G>A | p.Val181Ile | missense variant | moderate | contig2282 | 549533 | G/A |
|
GGR | c.581C>T | p.Ala194Val | missense variant | moderate | contig2282 | 549573 | C/T | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.156 Kompolti (SRR14708277)
- 0.159 Rest (RSP11377)
- 0.177 AOAC MI 533 (RSP11753)
- 0.180 Suver Haze (RSP11364)
- 0.186 AOAC MI 508 (RSP11750)
- 0.187 AOAC MI 588 (RSP11760)
- 0.188 Lift (RSP11378)
- 0.190 AOAC MI 532 (RSP11752)
- 0.192 AOAC MI 545 (RSP11756)
- 0.194 AOAC MI 567 (RSP11758)
- 0.196 AOAC MI 569 (RSP11759)
- 0.197 Electra (RSP11366)
- 0.197 AOAC MI 542 (RSP11755)
- 0.198 AOAC MI 504 (RSP11749)
- 0.200 AOAC MI 501 (RSP11748)
- 0.200 AOAC MI 535 (RSP11754)
- 0.200 AOAC MI 599 (RSP11762)
- 0.202 Uniko B (SRR14708278)
- 0.203 AOAC MI 548 (RSP11757)
- 0.207 Blue Dream (RSP11009)
Nearest genetic relatives (Base Tree)
- 0.229 Liberty Haze (RSP11000)
- 0.267 KYRG-11 (RSP11051)
- 0.274 Futura 75 (RSP10664)
- 0.276 Hermaphrodite ResearchSample2 (RSP11050)
- 0.279 Recon (RSP10755)
- 0.279 UP Sunrise (RSP10989)
- 0.281 Monoica (RSP10241)
- 0.283 RKM-2018-019 (RSP11111)
- 0.283 Tisza (RSP11044)
- 0.287 Golden Goat 2 (RSP10991)
- 0.287 RKM-2018-028 (RSP11120)
- 0.287 RKM-2018-032 (RSP11124)
- 0.290 Blueberry Cheesecake (RSP10684)
- 0.291 Tisza (RSP10659)
- 0.291 QUEEN JESUS (RSP10105)
- 0.299 Santhica27 (RSP11047)
- 0.299 Cbot-2019-001 (RSP11129)
- 0.300 Kyrgyz Gold (RSP11054)
- 0.301 Lovrin (RSP10658)
- 0.303 Blueberry Cheesecake (RSP10680)
Most genetically distant strains (All Samples)
- 0.432 JL yellow (RSP11075)
- 0.424 JL 4th Gen 4 (RSP11198)
- 0.421 JL 4th Gen 2 (RSP11194)
- 0.415 JL 4th Gen 5 (RSP11199)
- 0.413 Tiger Tail 30 (RSP11484)
- 0.405 JL 3rd Gen Mother (RSP11214)
- 0.403 80E (RSP11213)
- 0.392 JL 4th Gen 1 (RSP11193)
- 0.387 Feral (RSP11205)
- 0.386 White Label 1 (RSP11336)
- 0.386 JL 3rd Gen Father (RSP11196)
- 0.386 Skunk 18 (RSP11038)
- 0.379 Skunk 18 (RSP11030)
- 0.379 Red Eye OG (RSP11190)
- 0.372 Kuhl Dream (RSP11656)
- 0.370 JL 3rd Gen Mother (RSP11197)
- 0.367 Purple Strawberry AK47 1 1 (RSP11415)
- 0.366 RKM-2018-006 (RSP11097)
- 0.364 Star Dawg (RSP11352)
- 0.363 Northern Lights (RSP11501)
Most genetically distant strains (Base Tree)
- 0.440 JL yellow (RSP11075)
- 0.410 Skunk 18 (RSP11038)
- 0.398 Durban Poison (RSP11014)
- 0.375 CST (RSP11002)
- 0.374 RKM-2018-006 (RSP11097)
- 0.362 Blueberry Cheesecake (RSP10672)
- 0.360 Cbot-2019-006 (RSP11134)
- 0.359 Feral (RSP10890)
- 0.357 RKM-2018-026 (RSP11118)
- 0.356 Skywalker OG (RSP10837)
- 0.356 USO 31 (RSP10981)
- 0.355 RKM-2018-002 (RSP11093)
- 0.348 Jiangji (RSP10653)
- 0.347 RKM-2018-023 (RSP11115)
- 0.346 RKM-2018-009 (RSP11100)
- 0.345 Sour Raspberry (RSP10551)
- 0.345 Cherry (RSP11142)
- 0.343 Black Beauty (RSP11035)
- 0.343 RKM-2018-033 (RSP11125)
- 0.339 RKM-2018-027 (RSP11119)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 16
- Concordance:
- 12
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5