Advanced Strain Search

JL_Tent_4

RSP 11491

Grower: Kevin Mckernan

General Information

Accession Date
May 21, 2020
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.96%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0861
male female RSP11491

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
FAD2-2

UniProt

c.62C>T p.Pro21Leu missense variant moderate contig83 1803307

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.95_97delGTT p.Cys32del disruptive inframe deletion moderate contig121 2835800

IGV: Start, Jump

ATGT/A
NGS:
0.118
C90:
0.311
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.033 0.067 0.100 0.133
closely related moderately related distantly related
  1. 0.055 JL x NSPM1 3 (RSP11481)
  2. 0.058 JL Cross 23 (RSP11524)
  3. 0.067 JL Tent 1 yellow stake (RSP11488)
  4. 0.078 JL X NSPM1 33 (RSP11477)
  5. 0.088 JL Cross 9 (RSP11510)
  6. 0.090 JL Cross 15 (RSP11516)
  7. 0.099 JL X NSPM1 6 (RSP11468)
  8. 0.100 JL X NSPM1 30 (RSP11476)
  9. 0.100 JL Tent 2 (RSP11489)
  10. 0.101 JL Cross 19 (RSP11520)
  11. 0.103 JL Cross 22 (RSP11523)
  12. 0.103 JL X NSPM1 7 (RSP11469)
  13. 0.113 JL X NSPM1 21 (RSP11474)
  14. 0.113 JL Tent 3 (RSP11490)
  15. 0.115 JL Cross 17 (RSP11518)
  16. 0.115 JL X NSPM1 14 (RSP11473)
  17. 0.124 JL Cross 2 (RSP11503)
  18. 0.125 JL x NSPM1 1 5 (RSP11479)
  19. 0.127 JL Cross 28 (RSP11529)
  20. 0.129 JL X NSPM1 5 (RSP11467)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.473 80E (RSP11213)
  2. 0.470 Cbot-2019-005 (RSP11133)
  3. 0.464 80E (RSP11212)
  4. 0.460 CS (RSP11208)
  5. 0.458 Carmaleonte (RSP11207)
  6. 0.455 80E (RSP11211)
  7. 0.446 Northern Skunk (RSP11456)
  8. 0.438 Cherry Blossom (RSP11318)
  9. 0.437 Northern Lights (RSP11501)
  10. 0.431 Feral (RSP11205)
  11. 0.430 Cherry Blossom (RSP11274)
  12. 0.429 Cherry Blossom (RSP11333)
  13. 0.429 AVIDEKEL 2 0 (RSP11174)
  14. 0.428 BagSeed (RSP12627)
  15. 0.426 Unknown--Cherry Wine---001- (RSP11268)
  16. 0.424 CS Indica (RSP11658)
  17. 0.423 Cherry Blossom (RSP11323)
  18. 0.422 Cherry Blossom (RSP11311)
  19. 0.421 Arcata Trainwreck (RSP11176)
  20. 0.420 Carmagnola (RSP11202)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346838
Overlapping SNPs:
89
Concordance:
53

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495248
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
8d57d499fc4917931d0915bc3272ee8ee9b01270fd75dae3a88ec9cbf72c28d6
Stamping Certificate
Download PDF (39.9 KB)
SHASUM Hash
2712529d6bfe5007add405ca1493669e753c052f97ac61fb647f43dd55a654de
QR code for RSP11491

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