Cbot-2019-005

RSP 11133

Grower: Research Development Cannabinoid

General Information

Accession Date
February 5, 2019
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.81%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0424
male female RSP11133

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.484_485insGGTTGAGGAAG p.Lys162fs frameshift variant high contig700 2721188

IGV: Start, Jump

T/TCTTCCTCAACC
NGS:
0.002
C90:
0.000
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.191 Cbot-2019-003 (RSP11131)
  2. 0.210 AVIDEKEL 2 0 (RSP11174)
  3. 0.228 Cbot-2019-004 (RSP11132)
  4. 0.240 101st AIRBORN CBD (RSP11350)
  5. 0.242 CANNATONIC (RSP11349)
  6. 0.247 Kush Hemp E1 (RSP11128)
  7. 0.255 Cbot-2019-002 (RSP11130)
  8. 0.285 Cherry Blossom (RSP11311)
  9. 0.289 Queen Dream CBG (RSP11295)
  10. 0.290 RINGO S ANGEL (RSP10085)
  11. 0.292 Cherry Blossom (RSP11314)
  12. 0.297 RAPHAEL 2 (RSP11172)
  13. 0.299 Queen Dream CBG (RSP11283)
  14. 0.305 Queen Dream (RSP11278)
  15. 0.311 Avidekel (RSP10938)
  16. 0.311 Miss X (RSP10999)
  17. 0.312 Recon (RSP10755)
  18. 0.315 Unknown- Cherry Wine - 005 (RSP11272)
  19. 0.316 Queen Dream CBG (RSP11297)
  20. 0.316 Cherry Blossom (RSP11331)

Nearest genetic relatives (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.228 Cbot-2019-004 (RSP11132)
  2. 0.257 Kush Hemp E1 (RSP11128)
  3. 0.312 Recon (RSP10755)
  4. 0.336 Blueberry Cheesecake (RSP10684)
  5. 0.344 Liberty Haze (RSP11000)
  6. 0.349 Hermaphrodite ResearchSample2 (RSP11050)
  7. 0.350 Pie Hoe (RSP11073)
  8. 0.353 Cbot-2019-001 (RSP11129)
  9. 0.354 RKM-2018-020 (RSP11112)
  10. 0.358 QUEEN JESUS (RSP10105)
  11. 0.358 Gold Cracker (RSP11048)
  12. 0.360 KYRG-11 (RSP11051)
  13. 0.361 Jiangji (RSP10653)
  14. 0.362 Kimbo Slice (RSP10997)
  15. 0.366 CST (RSP11002)
  16. 0.368 UP Sunrise (RSP10989)
  17. 0.370 Durban Poison (RSP11014)
  18. 0.371 The Gift (RSP10988)
  19. 0.374 RKM-2018-019 (RSP11111)
  20. 0.375 RKM-2018-003 (RSP11094)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.497 Cherry Blossom (RSP11326)
  2. 0.496 Cherry Blossom (RSP11318)
  3. 0.457 Chem 91 (RSP11185)
  4. 0.454 New York City Deisel (RSP11225)
  5. 0.453 JL 3rd Gen Mother (RSP11214)
  6. 0.453 JL yellow (RSP11075)
  7. 0.452 Escape Velocity (RSP11165)
  8. 0.451 JL 3rd Gen Mother (RSP11197)
  9. 0.450 Cherry Blossom (RSP11323)
  10. 0.447 Erez (RSP10942)
  11. 0.442 East Coast Sour Diesel (RSP10243)
  12. 0.441 Jacks Cleaner (RSP11347)
  13. 0.441 Sour D (RSP11343)
  14. 0.440 Brunswick High (RSP11164)
  15. 0.440 RKM-2018-018 (RSP11110)
  16. 0.439 Bordello (RSP11228)
  17. 0.436 RKM-2018-024 (RSP11116)
  18. 0.435 Cherry Blossom (RSP11306)
  19. 0.434 OR (RSP10940)
  20. 0.433 Cherry Blossom (RSP11322)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.451 JL yellow (RSP11075)
  2. 0.440 RKM-2018-018 (RSP11110)
  3. 0.438 Hermaphrodite Research Sample1 (RSP11049)
  4. 0.436 RKM-2018-002 (RSP11093)
  5. 0.428 Sour Raspberry (RSP10551)
  6. 0.417 Tygra (RSP10667)
  7. 0.414 Black Beauty (RSP11035)
  8. 0.414 RKM-2018-023 (RSP11115)
  9. 0.410 Monoica (RSP10241)
  10. 0.408 RKM-2018-029 (RSP11121)
  11. 0.408 Italian Kiss (RSP11034)
  12. 0.407 Santhica27 (RSP11047)
  13. 0.406 Blueberry Cheesecake (RSP10672)
  14. 0.406 Carmagnola (RSP11037)
  15. 0.406 Skunk 18 (RSP11038)
  16. 0.404 Feral (RSP10890)
  17. 0.404 Skywalker OG (RSP10837)
  18. 0.403 RKM-2018-009 (RSP11100)
  19. 0.402 Fedora 17 (RSP10661)
  20. 0.399 RKM-2018-005 (RSP11096)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347304
Overlapping SNPs:
123
Concordance:
87

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
6a730f9bfdf2012f40fa6f202a4ece08037764e9f2633cf33c3715723bdc3422
Stamping Certificate
Download PDF (844.9 KB)
SHASUM Hash
d84ffd750f97c43adbc75da8f4c3ced744b7c299981deb36d4d083d299d31ee8
QR code for RSP11133

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