Cherry Blossom

RSP 11318

Grower: Yabba Cannaba

General Information

Sample Name
CC7
Accession Date
October 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.94%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0471
male female RSP11318

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
FAD2-2

UniProt

c.62C>T p.Pro21Leu missense variant moderate contig83 1803307

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
FAD2-2

UniProt

c.47_57delTGAATCATACT p.Leu16fs frameshift variant high contig83 1803311

IGV: Start, Jump

GAGTATGATTCA/G
NGS:
0.018
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.744+1_744+19delGTAATTTATTTTATTATAA splice donor variant & splice region variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/G
NGS:
0.096
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.202 Cherry Blossom (RSP11302)
  2. 0.223 Unknown- Cherry Wine - 001 (RSP11268)
  3. 0.232 Cherry Blossom (RSP11274)
  4. 0.238 Cherry Blossom (RSP11321)
  5. 0.241 Cherry Blossom (RSP11310)
  6. 0.254 Cherry Blossom (RSP11327)
  7. 0.263 Cherry Blossom (RSP11323)
  8. 0.271 Queen Dream (RSP11291)
  9. 0.274 Queen Dream CBG (RSP11283)
  10. 0.275 Cherry Blossom (RSP11308)
  11. 0.277 Cherry Blossom (RSP11335)
  12. 0.281 Cherry Blossom (RSP11331)
  13. 0.281 Wife (RSP11148)
  14. 0.282 Cherry Blossom (RSP11299)
  15. 0.283 Cherry Blossom (RSP11334)
  16. 0.292 UP Sunrise (RSP10989)
  17. 0.293 Cherry Blossom (RSP11328)
  18. 0.294 Cherry Blossom (RSP11319)
  19. 0.298 Queen Dream CBG (RSP11296)
  20. 0.298 Queen Dream CBG (RSP11282)

Nearest genetic relatives (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.301 UP Sunrise (RSP10989)
  2. 0.359 Cbot-2019-001 (RSP11129)
  3. 0.373 Liberty Haze (RSP11000)
  4. 0.383 RKM-2018-028 (RSP11120)
  5. 0.387 QUEEN JESUS (RSP10105)
  6. 0.390 Blueberry Cheesecake (RSP10672)
  7. 0.391 RKM-2018-006 (RSP11097)
  8. 0.394 Cherry (RSP11143)
  9. 0.395 Golden Goat 2 (RSP10991)
  10. 0.396 Blueberry Cheesecake (RSP10684)
  11. 0.397 Durban Poison (RSP11014)
  12. 0.408 RKM-2018-018 (RSP11110)
  13. 0.418 Black Beauty (RSP11035)
  14. 0.419 Tisza (RSP10659)
  15. 0.423 Sour Raspberry (RSP10551)
  16. 0.424 RKM-2018-019 (RSP11111)
  17. 0.424 Blue Dream (RSP11033)
  18. 0.425 Tygra (RSP10667)
  19. 0.426 RKM-2018-023 (RSP11115)
  20. 0.428 RKM-2018-005 (RSP11096)

Most genetically distant strains (All Samples)

0 0.142 0.283 0.425 0.567
clone distance sibling distance more distant
  1. 0.548 80E (RSP11213)
  2. 0.543 80E (RSP11211)
  3. 0.537 Kush Hemp E1 (RSP11128)
  4. 0.536 Garlic (RSP11341)
  5. 0.530 80E (RSP11212)
  6. 0.519 Red Eye OG (RSP11190)
  7. 0.513 RKM-2018-026 (RSP11118)
  8. 0.510 Skywalker OG (RSP10837)
  9. 0.508 Abacus (RSP11266)
  10. 0.504 Feral (RSP11205)
  11. 0.499 RKM-2018-013 (RSP11104)
  12. 0.497 SFVxTK (RSP11072)
  13. 0.497 Star Dawg (RSP11352)
  14. 0.496 Cbot-2019-005 (RSP11133)
  15. 0.495 Rugburn OG (RSP11353)
  16. 0.494 JL 4th Gen 6 (RSP11200)
  17. 0.493 RKM-2018-012 (RSP11103)
  18. 0.493 MENDO BREATH (RSP11242)
  19. 0.492 Pie Hoe (RSP11073)
  20. 0.489 JL 3rd Gen Father (RSP11196)

Most genetically distant strains (Base Tree)

0 0.142 0.283 0.425 0.567
clone distance sibling distance more distant
  1. 0.538 Kush Hemp E1 (RSP11128)
  2. 0.524 Skywalker OG (RSP10837)
  3. 0.521 RKM-2018-026 (RSP11118)
  4. 0.503 Cbot-2019-005 (RSP11133)
  5. 0.500 Pie Hoe (RSP11073)
  6. 0.497 RKM-2018-002 (RSP11093)
  7. 0.489 RKM-2018-034 (RSP11126)
  8. 0.482 Feral (RSP10890)
  9. 0.476 JL yellow (RSP11075)
  10. 0.474 RKM-2018-022 (RSP11114)
  11. 0.474 Hermaphrodite ResearchSample2 (RSP11050)
  12. 0.471 CST (RSP11002)
  13. 0.470 Santhica27 (RSP11047)
  14. 0.469 Monoica (RSP10241)
  15. 0.469 Jiangji (RSP10653)
  16. 0.467 Tisza (RSP11044)
  17. 0.466 RKM-2018-033 (RSP11125)
  18. 0.466 Skunk 18 (RSP11038)
  19. 0.463 KYRG-11 (RSP11051)
  20. 0.462 Cherry (RSP11142)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448748
Overlapping SNPs:
64
Concordance:
39

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495321
Overlapping SNPs:
7
Concordance:
7

Blockchain Registration Information

Transaction ID
93f24392102a9dd31a6058812e616ed2aaf98a3b3600e4d917569f74e0f8688f
Stamping Certificate
Download PDF (867.5 KB)
SHASUM Hash
0e0921271047885fcf7d24a1669dc6b85fcbcc76f0aadf2c8830b0bc2653a9e3
QR code for RSP11318

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