Cherry Blossom
RSP 11318
Grower: Yabba Cannaba
General Information
- Sample Name
- CC7
- Accession Date
- October 16, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
FAD2-2 | c.62C>T | p.Pro21Leu | missense variant | moderate | contig83 | 1803307 | G/A |
|
FAD2-2 |
c.47_57delTG |
p.Leu16fs | frameshift variant | high | contig83 | 1803311 |
GAGTATGATTCA |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.744+1_744+ |
splice donor variant & splice region variant & intron variant | high | contig121 | 2831022 |
GGTAATTTATTT |
|
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.202 Cherry Blossom (RSP11302)
- 0.223 Unknown- Cherry Wine - 001 (RSP11268)
- 0.232 Cherry Blossom (RSP11274)
- 0.238 Cherry Blossom (RSP11321)
- 0.241 Cherry Blossom (RSP11310)
- 0.254 Cherry Blossom (RSP11327)
- 0.263 Cherry Blossom (RSP11323)
- 0.271 Queen Dream (RSP11291)
- 0.274 Queen Dream CBG (RSP11283)
- 0.275 Cherry Blossom (RSP11308)
- 0.277 Cherry Blossom (RSP11335)
- 0.281 Cherry Blossom (RSP11331)
- 0.281 Wife (RSP11148)
- 0.282 Cherry Blossom (RSP11299)
- 0.283 Cherry Blossom (RSP11334)
- 0.292 UP Sunrise (RSP10989)
- 0.293 Cherry Blossom (RSP11328)
- 0.294 Cherry Blossom (RSP11319)
- 0.298 Queen Dream CBG (RSP11296)
- 0.298 Queen Dream CBG (RSP11282)
Nearest genetic relatives (Base Tree)
- 0.301 UP Sunrise (RSP10989)
- 0.359 Cbot-2019-001 (RSP11129)
- 0.373 Liberty Haze (RSP11000)
- 0.383 RKM-2018-028 (RSP11120)
- 0.387 QUEEN JESUS (RSP10105)
- 0.390 Blueberry Cheesecake (RSP10672)
- 0.391 RKM-2018-006 (RSP11097)
- 0.394 Cherry (RSP11143)
- 0.395 Golden Goat 2 (RSP10991)
- 0.396 Blueberry Cheesecake (RSP10684)
- 0.397 Durban Poison (RSP11014)
- 0.408 RKM-2018-018 (RSP11110)
- 0.418 Black Beauty (RSP11035)
- 0.419 Tisza (RSP10659)
- 0.423 Sour Raspberry (RSP10551)
- 0.424 RKM-2018-019 (RSP11111)
- 0.424 Blue Dream (RSP11033)
- 0.425 Tygra (RSP10667)
- 0.426 RKM-2018-023 (RSP11115)
- 0.428 RKM-2018-005 (RSP11096)
Most genetically distant strains (All Samples)
- 0.548 80E (RSP11213)
- 0.543 80E (RSP11211)
- 0.537 Kush Hemp E1 (RSP11128)
- 0.536 Garlic (RSP11341)
- 0.530 80E (RSP11212)
- 0.519 Red Eye OG (RSP11190)
- 0.513 RKM-2018-026 (RSP11118)
- 0.510 Skywalker OG (RSP10837)
- 0.508 Abacus (RSP11266)
- 0.504 Feral (RSP11205)
- 0.499 RKM-2018-013 (RSP11104)
- 0.497 SFVxTK (RSP11072)
- 0.497 Star Dawg (RSP11352)
- 0.496 Cbot-2019-005 (RSP11133)
- 0.495 Rugburn OG (RSP11353)
- 0.494 JL 4th Gen 6 (RSP11200)
- 0.493 RKM-2018-012 (RSP11103)
- 0.493 MENDO BREATH (RSP11242)
- 0.492 Pie Hoe (RSP11073)
- 0.489 JL 3rd Gen Father (RSP11196)
Most genetically distant strains (Base Tree)
- 0.538 Kush Hemp E1 (RSP11128)
- 0.524 Skywalker OG (RSP10837)
- 0.521 RKM-2018-026 (RSP11118)
- 0.503 Cbot-2019-005 (RSP11133)
- 0.500 Pie Hoe (RSP11073)
- 0.497 RKM-2018-002 (RSP11093)
- 0.489 RKM-2018-034 (RSP11126)
- 0.482 Feral (RSP10890)
- 0.476 JL yellow (RSP11075)
- 0.474 RKM-2018-022 (RSP11114)
- 0.474 Hermaphrodite ResearchSample2 (RSP11050)
- 0.471 CST (RSP11002)
- 0.470 Santhica27 (RSP11047)
- 0.469 Monoica (RSP10241)
- 0.469 Jiangji (RSP10653)
- 0.467 Tisza (RSP11044)
- 0.466 RKM-2018-033 (RSP11125)
- 0.466 Skunk 18 (RSP11038)
- 0.463 KYRG-11 (RSP11051)
- 0.462 Cherry (RSP11142)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 64
- Concordance:
- 39
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 7
- Concordance:
- 7
Blockchain Registration Information
- Transaction ID
-
93f24392102a9dd3
1a6058812e616ed2 aaf98a3b3600e4d9 17569f74e0f8688f - Stamping Certificate
- Download PDF (867.5 KB)
- SHASUM Hash
-
0e0921271047885f
cf7d24a1669dc6b8 5fcbcc76f0aadf2c 8830b0bc2653a9e3