Cherry Blossom

RSP 11310

Grower: Yabba Cannaba

General Information

Sample Name
CK2
Accession Date
October 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.12%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0581
male female RSP11310

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.556A>G p.Arg186Gly missense variant & splice region variant moderate contig700 2721117

IGV: Start, Jump

T/C
NGS:
0.022
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.157 Cherry Blossom (RSP11299)
  2. 0.158 Cherry Blossom (RSP11332)
  3. 0.159 Cherry Blossom (RSP11302)
  4. 0.177 Unknown- Cherry Wine - 005 (RSP11272)
  5. 0.179 Cherry Blossom (RSP11328)
  6. 0.184 Cherry Blossom (RSP11304)
  7. 0.201 Cherry Blossom (RSP11334)
  8. 0.207 Cherry Blossom (RSP11331)
  9. 0.213 Cherry Blossom (RSP11320)
  10. 0.216 Unknown- Cherry Wine - 004 (RSP11271)
  11. 0.217 Unknown- Cherry Wine - 002 (RSP11269)
  12. 0.219 Midnight (RSP10941)
  13. 0.220 Cherry Wine (RSP11145)
  14. 0.221 Unknown- Cherry Wine - 003 (RSP11270)
  15. 0.222 Cherry Wine (RSP11305)
  16. 0.222 Cherry Wine (RSP11307)
  17. 0.226 Cherry Blossom (RSP11309)
  18. 0.226 Cherry Blossom (RSP11330)
  19. 0.228 Doug s Varin (RSP11243)
  20. 0.229 FL30 (RSP11361)

Nearest genetic relatives (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.271 Blueberry Cheesecake (RSP10684)
  2. 0.293 Liberty Haze (RSP11000)
  3. 0.295 Cherry (RSP11143)
  4. 0.300 Durban Poison (RSP11014)
  5. 0.307 UP Sunrise (RSP10989)
  6. 0.322 Cherry (RSP11142)
  7. 0.349 Cbot-2019-001 (RSP11129)
  8. 0.354 Tygra (RSP10667)
  9. 0.354 QUEEN JESUS (RSP10105)
  10. 0.356 RKM-2018-031 (RSP11123)
  11. 0.357 Recon (RSP10755)
  12. 0.363 Blueberry Cheesecake (RSP10672)
  13. 0.366 RKM-2018-003 (RSP11094)
  14. 0.370 Golden Goat 2 (RSP10991)
  15. 0.372 RKM-2018-020 (RSP11112)
  16. 0.374 RKM-2018-005 (RSP11096)
  17. 0.376 RKM-2018-029 (RSP11121)
  18. 0.378 RKM-2018-023 (RSP11115)
  19. 0.382 RKM-2018-027 (RSP11119)
  20. 0.384 Cbot-2019-006 (RSP11134)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.473 Kush Hemp E1 (RSP11128)
  2. 0.466 JL yellow (RSP11075)
  3. 0.461 JL 4th Gen 2 (RSP11194)
  4. 0.461 Red Eye OG (RSP11190)
  5. 0.459 80E (RSP11213)
  6. 0.457 JL 4th Gen 5 (RSP11199)
  7. 0.457 RKM-2018-026 (RSP11118)
  8. 0.453 JL 3rd Gen Mother (RSP11214)
  9. 0.451 80E (RSP11212)
  10. 0.450 Garlic (RSP11341)
  11. 0.450 80E (RSP11211)
  12. 0.445 Skywalker OG (RSP10837)
  13. 0.445 Abacus (RSP11266)
  14. 0.444 Danny Noonan (RSP11070)
  15. 0.443 JL 4th Gen 6 (RSP11200)
  16. 0.440 Feral (RSP11205)
  17. 0.440 Chem 91 (RSP11185)
  18. 0.439 White Label 1 (RSP11336)
  19. 0.438 USO 31 (RSP10983)
  20. 0.436 JL 3rd Gen Father (RSP11196)

Most genetically distant strains (Base Tree)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.476 Kush Hemp E1 (RSP11128)
  2. 0.468 JL yellow (RSP11075)
  3. 0.465 RKM-2018-026 (RSP11118)
  4. 0.462 Skywalker OG (RSP10837)
  5. 0.444 RKM-2018-034 (RSP11126)
  6. 0.437 Cbot-2019-005 (RSP11133)
  7. 0.436 RKM-2018-002 (RSP11093)
  8. 0.431 RKM-2018-018 (RSP11110)
  9. 0.428 Feral (RSP10890)
  10. 0.428 Carmagnola (RSP11037)
  11. 0.428 Italian Kiss (RSP11034)
  12. 0.427 USO 31 (RSP10981)
  13. 0.427 RKM-2018-022 (RSP11114)
  14. 0.423 Hermaphrodite Research Sample1 (RSP11049)
  15. 0.422 Ivory (RSP10668)
  16. 0.422 Pie Hoe (RSP11073)
  17. 0.421 Santhica27 (RSP11047)
  18. 0.419 Sour Raspberry (RSP10551)
  19. 0.417 Black Beauty (RSP11035)
  20. 0.413 KYRG-11 (RSP11051)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347252
Overlapping SNPs:
65
Concordance:
40

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495237
Overlapping SNPs:
7
Concordance:
7

Blockchain Registration Information

Transaction ID
60b3d99323747c3ef9ec582da474535d58dbbd336e7814d491df26f9d7911919
Stamping Certificate
Download PDF (850.9 KB)
SHASUM Hash
d1269d845c79eb1c8cf56d9c25cfa1ad6d1c2d3a976673988c27c046bd36df47
QR code for RSP11310

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