Cherry Blossom
RSP 11310
Grower: Yabba Cannaba
General Information
- Sample Name
- CK2
- Accession Date
- October 16, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.556A>G | p.Arg186Gly | missense variant & splice region variant | moderate | contig700 | 2721117 | T/C |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.157 Cherry Blossom (RSP11299)
- 0.158 Cherry Blossom (RSP11332)
- 0.159 Cherry Blossom (RSP11302)
- 0.177 Unknown- Cherry Wine - 005 (RSP11272)
- 0.179 Cherry Blossom (RSP11328)
- 0.184 Cherry Blossom (RSP11304)
- 0.201 Cherry Blossom (RSP11334)
- 0.207 Cherry Blossom (RSP11331)
- 0.213 Cherry Blossom (RSP11320)
- 0.216 Unknown- Cherry Wine - 004 (RSP11271)
- 0.217 Unknown- Cherry Wine - 002 (RSP11269)
- 0.219 Midnight (RSP10941)
- 0.220 Cherry Wine (RSP11145)
- 0.221 Unknown- Cherry Wine - 003 (RSP11270)
- 0.222 Cherry Wine (RSP11305)
- 0.222 Cherry Wine (RSP11307)
- 0.226 Cherry Blossom (RSP11309)
- 0.226 Cherry Blossom (RSP11330)
- 0.228 Doug s Varin (RSP11243)
- 0.229 FL30 (RSP11361)
Nearest genetic relatives (Base Tree)
- 0.271 Blueberry Cheesecake (RSP10684)
- 0.293 Liberty Haze (RSP11000)
- 0.295 Cherry (RSP11143)
- 0.300 Durban Poison (RSP11014)
- 0.307 UP Sunrise (RSP10989)
- 0.322 Cherry (RSP11142)
- 0.349 Cbot-2019-001 (RSP11129)
- 0.354 Tygra (RSP10667)
- 0.354 QUEEN JESUS (RSP10105)
- 0.356 RKM-2018-031 (RSP11123)
- 0.357 Recon (RSP10755)
- 0.363 Blueberry Cheesecake (RSP10672)
- 0.366 RKM-2018-003 (RSP11094)
- 0.370 Golden Goat 2 (RSP10991)
- 0.372 RKM-2018-020 (RSP11112)
- 0.374 RKM-2018-005 (RSP11096)
- 0.376 RKM-2018-029 (RSP11121)
- 0.378 RKM-2018-023 (RSP11115)
- 0.382 RKM-2018-027 (RSP11119)
- 0.384 Cbot-2019-006 (RSP11134)
Most genetically distant strains (All Samples)
- 0.473 Kush Hemp E1 (RSP11128)
- 0.466 JL yellow (RSP11075)
- 0.461 JL 4th Gen 2 (RSP11194)
- 0.461 Red Eye OG (RSP11190)
- 0.459 80E (RSP11213)
- 0.457 JL 4th Gen 5 (RSP11199)
- 0.457 RKM-2018-026 (RSP11118)
- 0.453 JL 3rd Gen Mother (RSP11214)
- 0.451 80E (RSP11212)
- 0.450 Garlic (RSP11341)
- 0.450 80E (RSP11211)
- 0.445 Skywalker OG (RSP10837)
- 0.445 Abacus (RSP11266)
- 0.444 Danny Noonan (RSP11070)
- 0.443 JL 4th Gen 6 (RSP11200)
- 0.440 Feral (RSP11205)
- 0.440 Chem 91 (RSP11185)
- 0.439 White Label 1 (RSP11336)
- 0.438 USO 31 (RSP10983)
- 0.436 JL 3rd Gen Father (RSP11196)
Most genetically distant strains (Base Tree)
- 0.476 Kush Hemp E1 (RSP11128)
- 0.468 JL yellow (RSP11075)
- 0.465 RKM-2018-026 (RSP11118)
- 0.462 Skywalker OG (RSP10837)
- 0.444 RKM-2018-034 (RSP11126)
- 0.437 Cbot-2019-005 (RSP11133)
- 0.436 RKM-2018-002 (RSP11093)
- 0.431 RKM-2018-018 (RSP11110)
- 0.428 Feral (RSP10890)
- 0.428 Carmagnola (RSP11037)
- 0.428 Italian Kiss (RSP11034)
- 0.427 USO 31 (RSP10981)
- 0.427 RKM-2018-022 (RSP11114)
- 0.423 Hermaphrodite Research Sample1 (RSP11049)
- 0.422 Ivory (RSP10668)
- 0.422 Pie Hoe (RSP11073)
- 0.421 Santhica27 (RSP11047)
- 0.419 Sour Raspberry (RSP10551)
- 0.417 Black Beauty (RSP11035)
- 0.413 KYRG-11 (RSP11051)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 65
- Concordance:
- 40
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 7
- Concordance:
- 7
Blockchain Registration Information
- Transaction ID
-
60b3d99323747c3e
f9ec582da474535d 58dbbd336e7814d4 91df26f9d7911919 - Stamping Certificate
- Download PDF (850.9 KB)
- SHASUM Hash
-
d1269d845c79eb1c
8cf56d9c25cfa1ad 6d1c2d3a97667398 8c27c046bd36df47