IUP3
SRR 14708256
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 | c.744C>G | p.Asp248Glu | missense variant | moderate | contig676 | 168993 | C/G |
|
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
GPPs1 |
c.923_927+2d |
p.Val308fs | frameshift variant & splice donor variant & splice region variant & intron variant | high | contig676 | 169798 | GTTTTGGT/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1364A>G | p.Asp455Gly | missense variant | moderate | contig2621 | 340642 | A/G |
|
PHL-2 | c.1381T>G | p.Phe461Val | missense variant | moderate | contig2621 | 340659 | T/G |
|
PHL-2 | c.1438C>G | p.Leu480Val | missense variant | moderate | contig2621 | 340716 | C/G |
|
PHL-2 | c.1450G>A | p.Glu484Lys | missense variant | moderate | contig2621 | 340728 | G/A |
|
PHL-2 | c.1493G>A | p.Gly498Asp | missense variant | moderate | contig2621 | 340771 | G/A |
|
PHL-2 | c.3020T>A | p.Ile1007Asn | missense variant | moderate | contig2621 | 343063 | T/A |
|
PHL-2 | c.3373A>G | p.Thr1125Ala | missense variant | moderate | contig2621 | 343416 | A/G | |
PHL-2 |
c.3556_3557d |
p.Lys1186fs | frameshift variant | high | contig2621 | 343598 | GAA/G | |
PKSG-4b |
c.535_545del |
p.Ile179fs | frameshift variant | high | contig700 | 2721127 |
CCCCACTCCAAT |
|
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4a |
c.49_50insTG |
p.Glu16_Gly1 |
disruptive inframe insertion | moderate | contig700 | 1936744 | A/AGGT |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
aPT1 | c.220A>G | p.Ile74Val | missense variant | moderate | contig121 | 2835927 | A/G | |
aPT1 | c.574A>T | p.Met192Leu | missense variant | moderate | contig121 | 2840182 | A/T |
|
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1115A>G | p.Glu372Gly | missense variant | moderate | contig81 | 210077 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PHL-1 | c.176G>A | p.Gly59Glu | missense variant | moderate | contig1439 | 1492817 | C/T |
|
PHL-1 | c.175G>A | p.Gly59Arg | missense variant | moderate | contig1439 | 1492818 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1delATA | p.Met1del | start lost & conservative inframe deletion | high | contig700 | 1951880 | ATAT/A |
|
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.6773T>C | p.Leu2258Ser | missense variant | moderate | contig1460 | 1184314 | A/G | |
PIE1-2 | c.6636T>G | p.Asp2212Glu | missense variant | moderate | contig1460 | 1184451 | A/C | |
PIE1-2 | c.6623C>T | p.Ala2208Val | missense variant | moderate | contig1460 | 1184464 | G/A | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2962G>A | p.Asp988Asn | missense variant | moderate | contig1450 | 2044031 | C/T |
|
FLD | c.2840A>G | p.Asn947Ser | missense variant | moderate | contig1450 | 2044192 | T/C |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
FLD | c.2585G>A | p.Arg862Gln | missense variant | moderate | contig1450 | 2045075 | C/T |
|
AAE1-3 | c.722G>A | p.Arg241Lys | missense variant | moderate | contig976 | 1083132 | C/T |
|
AAE1-3 | c.475G>A | p.Gly159Arg | missense variant | moderate | contig976 | 1083550 | C/T |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.296C>T | p.Pro99Leu | missense variant | moderate | contig976 | 1083729 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
|
AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.3G>A | p.Met1? | start lost | high | contig976 | 1084072 | C/T | |
PKSB-3 |
c.1880_1891d |
p.His627_Gly |
disruptive inframe deletion | moderate | contig93 | 3339981 |
CTGGCCATGGCC |
|
PKSB-3 | c.1901C>G | p.Ala634Gly | missense variant | moderate | contig93 | 3340008 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.106 IUP2 (SRR14708257)
- 0.129 IUP1 (SRR14708258)
- 0.216 IBR3 (SRR14708249)
- 0.217 IBR2 (SRR14708250)
- 0.219 IBR1 (SRR14708251)
- 0.234 IBE (SRR14708228)
- 0.260 PID1 (SRR14708248)
- 0.266 IUL1 (SRR14708254)
- 0.267 PID2 (SRR14708247)
- 0.270 Tak-HN (RSP11618)
- 0.275 SCN (SRR14708201)
- 0.276 R4 (RSP11617)
- 0.276 IUL2 (SRR14708253)
- 0.276 PCL1 (SRR14708246)
- 0.277 YNN (SRR14708199)
- 0.278 Squirrel Tail -31- (RSP11485)
- 0.279 PCL2 (SRR14708245)
- 0.280 Jiangji (RSP10653)
- 0.280 Tiger Tail -78- (RSP11619)
- 0.281 IUL3 (SRR14708252)
Nearest genetic relatives (Base Tree)
- 0.279 Jiangji (RSP10653)
- 0.282 Kyrgyz Gold (RSP11054)
- 0.284 KYRG-11 (RSP11051)
- 0.291 Lovrin (RSP10658)
- 0.296 Tisza (RSP10659)
- 0.298 Santhica27 (RSP11047)
- 0.298 Fedora 17 (RSP10661)
- 0.300 Tygra (RSP10667)
- 0.302 Ivory (RSP10668)
- 0.304 USO 31 (RSP10981)
- 0.306 Futura 75 (RSP10664)
- 0.307 Carmagnola (RSP11037)
- 0.312 Carmagnola (RSP10979)
- 0.312 Feral (RSP10890)
- 0.316 Monoica (RSP10241)
- 0.317 Tisza (RSP11044)
- 0.328 Hermaphrodite ResearchSample2 (RSP11050)
- 0.331 Kimbo Slice (RSP10997)
- 0.332 Recon (RSP10755)
- 0.339 RKM-2018-029 (RSP11121)
Most genetically distant strains (All Samples)
- 0.458 Cherry Blossom (RSP11318)
- 0.444 Cherry Blossom (RSP11302)
- 0.444 GG4 (RSP11978)
- 0.444 Cherry Blossom (RSP11323)
- 0.441 Chem 91 (RSP11185)
- 0.441 Cherry Blossom (RSP11300)
- 0.438 Cherry Blossom (RSP11301)
- 0.436 GG#4 (RSP11461)
- 0.436 Cold Weather Cherry (RSP11414)
- 0.435 Cherry Blossom (RSP11322)
- 0.434 Queen Dream CBG (RSP11287)
- 0.433 Medxotic (RSP11410)
- 0.432 Cherry Blossom (RSP11331)
- 0.432 Cherry Blossom (RSP11328)
- 0.432 QQD2 (RSP11450)
- 0.431 CHEM4 (RSP12090)
- 0.431 Super Sour Diesel (RSP11191)
- 0.431 RKM-2018-002 (RSP11093)
- 0.431 Unknown--Cherry Wine---001- (RSP11268)
- 0.430 Motor Breath #15 (RSP12093)
Most genetically distant strains (Base Tree)
- 0.433 RKM-2018-002 (RSP11093)
- 0.417 RKM-2018-028 (RSP11120)
- 0.412 RKM-2018-032 (RSP11124)
- 0.401 Skywalker OG (RSP10837)
- 0.398 Cherry (RSP11142)
- 0.397 RKM-2018-023 (RSP11115)
- 0.396 RKM-2018-004 (RSP11096)
- 0.395 Italian Kiss (RSP11034)
- 0.394 Cbot-2019-001 (RSP11129)
- 0.394 RKM-2018-009 (RSP11100)
- 0.394 RKM-2018-018 (RSP11110)
- 0.392 Gold Cracker (RSP11048)
- 0.389 RKM-2018-022 (RSP11114)
- 0.389 Hermaphrodite Research Sample1 (RSP11049)
- 0.387 JL yellow (RSP11075)
- 0.386 Cherry (RSP11143)
- 0.385 RKM-2018-006 (RSP11097)
- 0.384 Kush Hemp E1 (RSP11128)
- 0.383 RKM-2018-020 (RSP11112)
- 0.381 Blue Dream (RSP11033)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 12
- Concordance:
- 8
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4