GG4

RSP 11978

Grower: Happy Valley Ventures

Summary

GG4 (RSP11978/Happy Valley Ventures) is a genetic Type I plant and its genetics appear rare. The sample's closest relative in the database is GG#4 (RSP11461/Happy Valley) and it is a potential sibling. The heterozygosity rate is 0.92% which is average (42.4 percentile).

General Information

Accession Date
April 29, 2021
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.92%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0466
male female RSP11978

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.527G>T p.Trp176Leu missense variant moderate contig700 2721146

IGV: Start, Jump

C/A
NGS:
0.033
C90:
0.000
PKSG-4b

UniProt

c.526T>C p.Trp176Arg missense variant moderate contig700 2721147

IGV: Start, Jump

A/G
NGS:
0.037
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
FAD2-2

UniProt

c.172G>T p.Asp58Tyr missense variant moderate contig83 1803197

IGV: Start, Jump

C/A
NGS:
0.070
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.128 GG 4 (RSP11461)
  2. 0.133 RKM-2018-021 (RSP11113)
  3. 0.134 RKM-2018-032 (RSP11124)
  4. 0.135 RKM-2018-017 (RSP11109)
  5. 0.194 Lemon OG Haze (RSP11977)
  6. 0.225 501st OG (RSP11241)
  7. 0.234 Super Sour Diesel (RSP11191)
  8. 0.250 RKM-2018-008 (RSP11099)
  9. 0.252 The Gift (RSP10988)
  10. 0.255 CPH (RSP11367)
  11. 0.259 Glueberry OG (RSP11222)
  12. 0.262 unknown (RSP11432)
  13. 0.263 RKM-2018-013 (RSP11104)
  14. 0.264 Rugburn OG (RSP11353)
  15. 0.266 Skywalker OG (RSP10837)
  16. 0.271 Whitey (RSP11363)
  17. 0.273 SFVxTK (RSP11072)
  18. 0.273 Rest (RSP11377)
  19. 0.275 Jolly Rancher (RSP11639)
  20. 0.279 JL x NSPM1 3 (RSP11481)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.134 RKM-2018-032 (RSP11124)
  2. 0.257 The Gift (RSP10988)
  3. 0.285 Skywalker OG (RSP10837)
  4. 0.297 RKM-2018-002 (RSP11093)
  5. 0.302 RKM-2018-026 (RSP11118)
  6. 0.309 Blueberry Cheesecake (RSP10680)
  7. 0.318 RKM-2018-005 (RSP11096)
  8. 0.321 Blueberry Cheesecake (RSP10684)
  9. 0.327 Golden Goat 2 (RSP10991)
  10. 0.327 Liberty Haze (RSP11000)
  11. 0.328 RKM-2018-033 (RSP11125)
  12. 0.335 Kimbo Slice (RSP10997)
  13. 0.345 UP Sunrise (RSP10989)
  14. 0.347 Hermaphrodite Research Sample1 (RSP11049)
  15. 0.347 Kush Hemp E1 (RSP11128)
  16. 0.352 Pie Hoe (RSP11073)
  17. 0.353 RKM-2018-020 (RSP11112)
  18. 0.355 RKM-2018-009 (RSP11100)
  19. 0.357 RKM-2018-034 (RSP11126)
  20. 0.358 Cbot-2019-006 (RSP11134)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.511 Northern Lights (RSP11501)
  2. 0.498 JL 3rd Gen Father (RSP11196)
  3. 0.488 80E (RSP11213)
  4. 0.481 Unknown- Cherry Wine - 001 (RSP11268)
  5. 0.477 Cbot-2019-005 (RSP11133)
  6. 0.470 80E (RSP11211)
  7. 0.466 80E (RSP11212)
  8. 0.464 Unknown- Cherry Wine - 003 (RSP11270)
  9. 0.462 RKM-2018-019 (RSP11111)
  10. 0.462 RKM-2018-007 (RSP11098)
  11. 0.461 Cherry Wine (RSP11267)
  12. 0.461 R4 (RSP11617)
  13. 0.461 Monoica (RSP10241)
  14. 0.457 JL 2 (RSP11076)
  15. 0.456 JL 4th Gen 5 (RSP11199)
  16. 0.456 JL 4th Gen 4 (RSP11198)
  17. 0.456 Unknown- Cherry Wine - 002 (RSP11269)
  18. 0.455 JL yellow (RSP11075)
  19. 0.455 Carmagnola (RSP10980)
  20. 0.454 Northern Skunk (RSP11456)

Most genetically distant strains (Base Tree)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.489 Cbot-2019-005 (RSP11133)
  2. 0.480 RKM-2018-022 (RSP11114)
  3. 0.473 RKM-2018-019 (RSP11111)
  4. 0.462 Monoica (RSP10241)
  5. 0.457 Carmagnola (RSP11037)
  6. 0.455 Cherry (RSP11142)
  7. 0.455 Italian Kiss (RSP11034)
  8. 0.452 RKM-2018-003 (RSP11094)
  9. 0.449 JL yellow (RSP11075)
  10. 0.439 Cbot-2019-004 (RSP11132)
  11. 0.439 Jiangji (RSP10653)
  12. 0.437 Feral (RSP10890)
  13. 0.434 RKM-2018-027 (RSP11119)
  14. 0.433 Futura 75 (RSP10664)
  15. 0.428 QUEEN JESUS (RSP10105)
  16. 0.426 KYRG-11 (RSP11051)
  17. 0.425 Ivory (RSP10668)
  18. 0.423 Fedora 17 (RSP10661)
  19. 0.423 Lovrin (RSP10658)
  20. 0.422 RKM-2018-006 (RSP11097)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349396
Overlapping SNPs:
81
Concordance:
60

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
78853d3fa10c7638d94df40f5098fc10e9a8ca82af8f22bd2105491a50e63b39
Stamping Certificate
Download PDF (39.7 KB)
SHASUM Hash
1d75f4368fa334e6ea664b1362e651e37e5c2d59ce5e2f1c0a6987750038f142
QR code for RSP11978

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