Queen Dream CBG

RSP 11287

Grower: Yabba Cannaba

General Information

Sample Name
LD5
Accession Date
October 9, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.91%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0375
male female RSP11287

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1944616

IGV: Start, Jump

C/T
NGS:
0.123
C90:
0.000
PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.718T>A p.Phe240Ile missense variant moderate contig700 1950920

IGV: Start, Jump

A/T
NGS:
0.114
C90:
0.000
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1951450

IGV: Start, Jump

A/C
NGS:
0.118
C90:
0.000
PKSG-2b

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1951451

IGV: Start, Jump

T/A
NGS:
0.116
C90:
0.000
PKSG-2b

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1951471

IGV: Start, Jump

G/C
NGS:
0.103
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.492G>C p.Glu164Asp missense variant moderate contig700 2721181

IGV: Start, Jump

C/G
NGS:
0.048
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.156 Hot Blonde (RSP11290)
  2. 0.178 Electra (RSP11366)
  3. 0.185 Queen Dream CBG (RSP11279)
  4. 0.190 Queen Dream (RSP11278)
  5. 0.193 Queen Dream CBG (RSP11281)
  6. 0.195 Queen Dream CBG (RSP11282)
  7. 0.196 Lift (RSP11378)
  8. 0.197 Queen Dream (RSP11289)
  9. 0.203 Calm (RSP11379)
  10. 0.205 Serious Happiness (RSP10763)
  11. 0.205 QLE1 (RSP11451)
  12. 0.206 Queen Dream CBG (RSP11285)
  13. 0.206 Queen Dream CBG (RSP11276)
  14. 0.208 QLF4 (RSP11441)
  15. 0.210 Queen Dream CBG (RSP11275)
  16. 0.212 Hot Blonde (RSP11292)
  17. 0.212 Blue Dream (RSP11009)
  18. 0.214 Blue Dream (RSP11017)
  19. 0.217 Miss X (RSP10999)
  20. 0.217 Blue Dream (RSP11004)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.220 UP Sunrise (RSP10989)
  2. 0.236 Durban Poison (RSP11014)
  3. 0.238 Blueberry Cheesecake (RSP10684)
  4. 0.256 Liberty Haze (RSP11000)
  5. 0.259 Golden Goat 2 (RSP10991)
  6. 0.266 Cbot-2019-001 (RSP11129)
  7. 0.277 Blue Dream (RSP11033)
  8. 0.301 RKM-2018-028 (RSP11120)
  9. 0.303 Hermaphrodite Research Sample1 (RSP11049)
  10. 0.304 RKM-2018-023 (RSP11115)
  11. 0.305 RKM-2018-019 (RSP11111)
  12. 0.309 Queen Jesus (RSP10105)
  13. 0.312 Gold Cracker (RSP11048)
  14. 0.312 RKM-2018-020 (RSP11112)
  15. 0.313 Blueberry Cheesecake (RSP10672)
  16. 0.313 RKM-2018-018 (RSP11110)
  17. 0.317 Cherry (RSP11142)
  18. 0.318 Pie Hoe (RSP11073)
  19. 0.318 Cherry (RSP11143)
  20. 0.318 RKM-2018-009 (RSP11100)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.482 Cherry Blossom (RSP11309)
  2. 0.468 Cherry Blossom (RSP11298)
  3. 0.458 80E (RSP11211)
  4. 0.455 Cherry Blossom (RSP11311)
  5. 0.454 Unknown--Cherry Wine---003- (RSP11270)
  6. 0.452 80E (RSP11213)
  7. 0.451 Cherry Blossom (RSP11328)
  8. 0.442 IUP2 (SRR14708257)
  9. 0.439 R3in134 (SRR14708220)
  10. 0.439 IUP1 (SRR14708258)
  11. 0.436 Tiger Tail -30- (RSP11484)
  12. 0.436 Cherry Blossom CBG (RSP11303)
  13. 0.436 Feral (RSP10890)
  14. 0.434 IUP3 (SRR14708256)
  15. 0.434 Cherry Blossom (RSP11314)
  16. 0.433 Cherry Blossom (RSP11317)
  17. 0.429 Unknown--Cherry Wine---004- (RSP11271)
  18. 0.426 PCL2 (SRR14708245)
  19. 0.425 R1in136 (SRR14708237)
  20. 0.423 VIR 223 - Bernburgskaya Odnodomnaya - bm (SRR14708217)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.441 Feral (RSP10890)
  2. 0.423 JL yellow (RSP11075)
  3. 0.413 Ivory (RSP10668)
  4. 0.411 Carmagnola (RSP11037)
  5. 0.410 RKM-2018-026 (RSP11118)
  6. 0.408 Carmagnola (RSP10979)
  7. 0.406 Monoica (RSP10241)
  8. 0.398 Fedora 17 (RSP10661)
  9. 0.397 Santhica27 (RSP11047)
  10. 0.395 Kyrgyz Gold (RSP11054)
  11. 0.390 Kush Hemp E1 (RSP11128)
  12. 0.390 Jiangji (RSP10653)
  13. 0.388 KYRG-11 (RSP11051)
  14. 0.388 Futura 75 (RSP10664)
  15. 0.386 Tisza (RSP11044)
  16. 0.384 Lovrin (RSP10658)
  17. 0.382 Cbot-2019-005 (RSP11133)
  18. 0.375 Skywalker OG (RSP10837)
  19. 0.372 RKM-2018-002 (RSP11093)
  20. 0.369 Cbot-2019-004 (RSP11132)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448490
Overlapping SNPs:
68
Concordance:
47

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495196
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
f9f13f261a5e76a8b62c1bdd4445e3344ec81512ef6aa599684bc578e93968e1
Stamping Certificate
Download PDF (856.7 KB)
SHASUM Hash
49d9b8a06e851f1ccce13d130dc8df7b6efec4ac25573140145aa491611334fc
QR code for RSP11287

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