VIR 223 - Bernburgskaya Odnodomnaya - bm
SRR 14708217
General Information
- Sample Name
- GBA
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Unknown
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 |
c.2903_2905d |
p.Ser968dup | disruptive inframe insertion | moderate | contig2621 | 342939 | T/TGCA | |
PHL-2 | c.3170T>C | p.Leu1057Pro | missense variant | moderate | contig2621 | 343213 | T/C |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PKSG-4b | c.558-1G>A | splice acceptor variant & intron variant | high | contig700 | 2715037 | C/T |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
ELF3 |
c.364_366del |
p.Lys122del | conservative inframe deletion | moderate | contig97 | 242066 | AAAG/A |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF5 | c.520A>G | p.Thr174Ala | missense variant | moderate | contig382 | 880382 | A/G | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
AAE1-2 | c.205T>A | p.Ser69Thr | missense variant | moderate | contig81 | 209167 | T/A |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1951397 | C/T |
|
PKSG-2b | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1951398 | A/C |
|
PKSG-2b | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1951408 | A/G | |
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
AAE1-3 | c.635G>A | p.Gly212Asp | missense variant | moderate | contig976 | 1083219 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
GGR | c.362A>T | p.Tyr121Phe | missense variant | moderate | contig2282 | 549354 | A/T |
|
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.810A>C | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/C |
|
PKSB-3 | c.509T>C | p.Val170Ala | missense variant & splice region variant | moderate | contig93 | 3336743 | T/C |
|
Nearest genetic relatives (All Samples)
- 0.176 B52 (SRR14708255)
- 0.189 Fedora 17 (SRR14708222)
- 0.193 Kompolti (SRR14708277)
- 0.201 Ferimon 12 (SRR14708233)
- 0.207 Tisza (RSP10659)
- 0.208 USO31 (RSP10233)
- 0.210 Serious Happiness (RSP10763)
- 0.212 Carmagnola (SRR14708200)
- 0.213 R1in136 (SRR14708237)
- 0.213 VIR 493, Glukhovskaja 10 Zheltostebel'naja (SRR14708230)
- 0.214 Tygra (RSP10667)
- 0.214 Blue Dream (RSP11006)
- 0.214 Rest (RSP11377)
- 0.215 Juso14 (SRR14708259)
- 0.218 Cheese (RSP10460)
- 0.219 Lovrin (RSP10658)
- 0.221 Blue Dream (RSP11007)
- 0.223 R2in135 (SRR14708236)
- 0.224 Recon (RSP10755)
- 0.224 VIR 483 (SRR14708238)
Nearest genetic relatives (Base Tree)
- 0.199 Tisza (RSP10659)
- 0.224 Lovrin (RSP10658)
- 0.245 Futura 75 (RSP10664)
- 0.246 Tygra (RSP10667)
- 0.247 Tisza (RSP11044)
- 0.248 Monoica (RSP10241)
- 0.255 Santhica27 (RSP11047)
- 0.259 Recon (RSP10755)
- 0.260 Liberty Haze (RSP11000)
- 0.261 Kimbo Slice (RSP10997)
- 0.266 Ivory (RSP10668)
- 0.267 The Gift (RSP10988)
- 0.272 USO 31 (RSP10981)
- 0.277 Kyrgyz Gold (RSP11054)
- 0.281 RKM-2018-003 (RSP11094)
- 0.282 Hermaphrodite ResearchSample2 (RSP11050)
- 0.282 Cherry (RSP11142)
- 0.286 UP Sunrise (RSP10989)
- 0.289 RKM-2018-020 (RSP11112)
- 0.289 Fedora 17 (RSP10661)
Most genetically distant strains (All Samples)
- 0.410 Feral (RSP11205)
- 0.402 Danny Noonan (RSP11070)
- 0.402 Cherry Blossom (RSP11306)
- 0.401 Tanao Sri-white 80 (RSP11621)
- 0.395 Cherry Blossom (RSP11325)
- 0.394 JL Cross 13 (RSP11514)
- 0.394 UP Sunset (RSP11256)
- 0.392 Cbot-2019-004 (RSP11132)
- 0.389 Northern Lights (RSP11501)
- 0.388 80E (RSP11213)
- 0.387 Super Sour Diesel (RSP11191)
- 0.383 JL yellow (RSP11075)
- 0.382 Unknown- Cherry Wine - 001 (RSP11268)
- 0.381 Tanao Sri 46 (RSP11486)
- 0.381 Unknown- Cherry Wine - 003 (RSP11270)
- 0.379 Tiger Tail 30 (RSP11484)
- 0.378 Cbot-2019-003 (RSP11131)
- 0.376 Dog Patch (RSP11725)
- 0.374 Cherry Blossom (RSP11318)
- 0.372 Big Bud (RSP11221)
Most genetically distant strains (Base Tree)
- 0.422 JL yellow (RSP11075)
- 0.401 Cbot-2019-004 (RSP11132)
- 0.376 RKM-2018-002 (RSP11093)
- 0.367 RKM-2018-029 (RSP11121)
- 0.362 Cbot-2019-005 (RSP11133)
- 0.361 RKM-2018-006 (RSP11097)
- 0.360 Blueberry Cheesecake (RSP10680)
- 0.356 Blue Dream (RSP11033)
- 0.354 Sour Raspberry (RSP10551)
- 0.351 RKM-2018-022 (RSP11114)
- 0.351 QUEEN JESUS (RSP10105)
- 0.349 RKM-2018-033 (RSP11125)
- 0.347 RKM-2018-026 (RSP11118)
- 0.345 RKM-2018-031 (RSP11123)
- 0.345 Jiangji (RSP10653)
- 0.337 RKM-2018-018 (RSP11110)
- 0.336 Gold Cracker (RSP11048)
- 0.335 Feral (RSP10890)
- 0.333 RKM-2018-027 (RSP11119)
- 0.328 Hermaphrodite Research Sample1 (RSP11049)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 10
- Concordance:
- 9
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3