VIR 223 - Bernburgskaya Odnodomnaya - bm
SRR 14708217
General Information
- Sample Name
- GBA
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Unknown
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 |
c.2903_2905d |
p.Ser968dup | disruptive inframe insertion | moderate | contig2621 | 342939 | T/TGCA | |
PHL-2 | c.3170T>C | p.Leu1057Pro | missense variant | moderate | contig2621 | 343213 | T/C |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PKSG-4b | c.558-1G>A | splice acceptor variant & intron variant | high | contig700 | 2715037 | C/T |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
ELF3 |
c.364_366del |
p.Lys122del | conservative inframe deletion | moderate | contig97 | 242066 | AAAG/A |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF5 | c.520A>G | p.Thr174Ala | missense variant | moderate | contig382 | 880382 | A/G | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
AAE1-2 | c.205T>A | p.Ser69Thr | missense variant | moderate | contig81 | 209167 | T/A |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1951397 | C/T |
|
PKSG-2b | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1951398 | A/C |
|
PKSG-2b | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1951408 | A/G | |
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
AAE1-3 | c.635G>A | p.Gly212Asp | missense variant | moderate | contig976 | 1083219 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
GGR | c.362A>T | p.Tyr121Phe | missense variant | moderate | contig2282 | 549354 | A/T |
|
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.810A>C | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/C |
|
PKSB-3 | c.509T>C | p.Val170Ala | missense variant & splice region variant | moderate | contig93 | 3336743 | T/C |
|
Nearest genetic relatives (All Samples)
- 0.173 Santhica27 (RSP10056)
- 0.181 Santhica 27 (RSP10665)
- 0.184 Beniko (SRR14708275)
- 0.184 USO31 (RSP10233)
- 0.186 Bialobrzeskie (SRR14708244)
- 0.191 Ferimon 12 (SRR14708233)
- 0.191 Juso14 (SRR14708259)
- 0.199 Santhica27 (RSP11047)
- 0.199 Monoica (RSP10241)
- 0.201 R1in136 (SRR14708237)
- 0.201 R1in136 (SRR14708226)
- 0.202 USO 31 (RSP10983)
- 0.202 R1in136 (SRR14708227)
- 0.202 Futura 75 (RSP10664)
- 0.205 Tygra (RSP10667)
- 0.207 Fedora 17 (SRR14708222)
- 0.208 Lovrin (RSP10658)
- 0.209 Santhica27 (RSP11046)
- 0.212 Delta-llosa (SRR14708272)
- 0.216 Santhica 27 (SRR14708211)
Nearest genetic relatives (Base Tree)
- 0.193 Tygra (RSP10667)
- 0.200 Monoica (RSP10241)
- 0.202 Santhica27 (RSP11047)
- 0.205 Futura 75 (RSP10664)
- 0.208 Lovrin (RSP10658)
- 0.214 Fedora 17 (RSP10661)
- 0.220 USO 31 (RSP10981)
- 0.231 Ivory (RSP10668)
- 0.241 Carmagnola (RSP11037)
- 0.241 Carmagnola (RSP10979)
- 0.246 Tisza (RSP10659)
- 0.250 Tisza (RSP11044)
- 0.260 Kyrgyz Gold (RSP11054)
- 0.264 KYRG-11 (RSP11051)
- 0.270 Feral (RSP10890)
- 0.287 Jiangji (RSP10653)
- 0.342 Recon (RSP10755)
- 0.344 Liberty Haze (RSP11000)
- 0.345 Kimbo Slice (RSP10997)
- 0.348 Black Beauty (RSP11035)
Most genetically distant strains (All Samples)
- 0.465 Cherry Blossom (RSP11318)
- 0.461 Cherry Blossom (RSP11300)
- 0.457 Cherry Blossom (RSP11312)
- 0.454 Cherry Blossom (RSP11301)
- 0.448 Cherry Blossom (RSP11325)
- 0.447 Unknown--Cherry Wine---001- (RSP11268)
- 0.443 JL x NSPM1 4 (RSP11482)
- 0.443 Cherry Blossom (RSP11331)
- 0.443 Cherry Blossom (RSP11311)
- 0.442 Cherry Blossom (RSP11306)
- 0.440 Escape Velocity (RSP11165)
- 0.438 Cherry Blossom (RSP11315)
- 0.438 Chematonic -Cannatonic x Chemdawg- (RSP11394)
- 0.437 Cherry Blossom (RSP11323)
- 0.437 Cherry Blossom (RSP11332)
- 0.437 Cherry Blossom (RSP11319)
- 0.437 Cherry Blossom (RSP11316)
- 0.436 Cherry Blossom (RSP11322)
- 0.431 JL Cross 13 (RSP11514)
- 0.429 Medxotic (RSP11410)
Most genetically distant strains (Base Tree)
- 0.422 Cbot-2019-005 (RSP11133)
- 0.419 RKM-2018-002 (RSP11093)
- 0.407 RKM-2018-006 (RSP11097)
- 0.405 RKM-2018-009 (RSP11100)
- 0.404 RKM-2018-032 (RSP11124)
- 0.399 Cherry (RSP11142)
- 0.398 Hermaphrodite Research Sample1 (RSP11049)
- 0.397 RKM-2018-027 (RSP11119)
- 0.397 RKM-2018-022 (RSP11114)
- 0.395 RKM-2018-028 (RSP11120)
- 0.394 Gold Cracker (RSP11048)
- 0.393 JL yellow (RSP11075)
- 0.393 Cbot-2019-001 (RSP11129)
- 0.392 RKM-2018-018 (RSP11110)
- 0.391 RKM-2018-023 (RSP11115)
- 0.387 RKM-2018-004 (RSP11096)
- 0.387 Kush Hemp E1 (RSP11128)
- 0.383 Cbot-2019-004 (RSP11132)
- 0.383 Blueberry Cheesecake (RSP10684)
- 0.381 RKM-2018-019 (RSP11111)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 10
- Concordance:
- 9
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3