Juso14
SRR 14708259
General Information
- Sample Name
- UJO
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.61G>A | p.Val21Ile | missense variant | moderate | contig2621 | 337630 | G/A |
|
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
HDS-2 | c.679G>C | p.Gly227Arg | missense variant | moderate | contig95 | 1990632 | G/C |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
Edestin | c.40G>A | p.Ala14Thr | missense variant | moderate | contig850 | 3065250 | C/T |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
FLD |
c.2811_2813d |
p.Gly938dup | disruptive inframe insertion & splice region variant | moderate | contig1450 | 2044218 | T/TCCC |
|
AAE1-3 | c.722G>A | p.Arg241Lys | missense variant | moderate | contig976 | 1083132 | C/T |
|
AAE1-3 | c.715G>A | p.Val239Ile | missense variant | moderate | contig976 | 1083139 | C/T |
|
GGR | c.32C>A | p.Thr11Lys | missense variant | moderate | contig2282 | 549024 | C/A |
|
PKSB-3 | c.1848G>A | p.Met616Ile | missense variant | moderate | contig93 | 3339955 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.145 R1in136 (SRR14708237)
- 0.174 R1in136 (SRR14708227)
- 0.178 Durban Poison 1 (RSP11013)
- 0.187 R1in136 (SRR14708225)
- 0.195 Santhica 27 (RSP10665)
- 0.197 Blue Dream (RSP11017)
- 0.197 JL 4th Gen 7 (RSP11153)
- 0.197 Santhica 27 (SRR14708211)
- 0.202 Tygra (RSP10667)
- 0.203 USO31 (RSP10233)
- 0.204 Liberty Haze (RSP11000)
- 0.204 B52 (SRR14708255)
- 0.208 Futura 75 (RSP10664)
- 0.209 R2in135 (SRR14708221)
- 0.210 VIR 449, Szegedi 9 (SRR14708213)
- 0.211 Beniko (SRR14708275)
- 0.214 Santhica27 (RSP10056)
- 0.214 AOAC MI 542 (RSP11755)
- 0.215 VIR 223, Bernburgskaya Odnodomnaya, bm (SRR14708217)
- 0.216 R1in136 (SRR14708226)
Nearest genetic relatives (Base Tree)
- 0.190 Liberty Haze (RSP11000)
- 0.213 Tygra (RSP10667)
- 0.217 Futura 75 (RSP10664)
- 0.219 Tisza (RSP10659)
- 0.233 Monoica (RSP10241)
- 0.233 UP Sunrise (RSP10989)
- 0.238 Lovrin (RSP10658)
- 0.239 Hermaphrodite ResearchSample2 (RSP11050)
- 0.242 Santhica27 (RSP11047)
- 0.250 RKM-2018-005 (RSP11096)
- 0.255 RKM-2018-031 (RSP11123)
- 0.257 Fedora 17 (RSP10661)
- 0.257 USO 31 (RSP10981)
- 0.259 RKM-2018-028 (RSP11120)
- 0.262 Kimbo Slice (RSP10997)
- 0.263 Ivory (RSP10668)
- 0.265 Jiangji (RSP10653)
- 0.275 Blueberry Cheesecake (RSP10684)
- 0.284 Durban Poison (RSP11014)
- 0.286 RKM-2018-029 (RSP11121)
Most genetically distant strains (All Samples)
- 0.441 80E (RSP11213)
- 0.430 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.421 80E (RSP11212)
- 0.415 JL 4th Gen 6 (RSP11200)
- 0.410 Northern Lights (RSP11501)
- 0.405 JL 2 (RSP11076)
- 0.400 JL 3rd Gen Father (RSP11196)
- 0.400 Cbot-2019-003 (RSP11131)
- 0.399 JL yellow (RSP11075)
- 0.399 PCL2 (SRR14708245)
- 0.399 80E (RSP11211)
- 0.393 Danny Noonan (RSP11070)
- 0.392 Super Sour Diesel (RSP11191)
- 0.391 Tanao Sri 46 (RSP11486)
- 0.391 RKM-2018-002 (RSP11093)
- 0.390 Sour Tsunami (RSP11187)
- 0.389 White Label 1 (RSP11336)
- 0.388 Tiger Tail 30 (RSP11484)
- 0.385 Squirrel Tail 31 (RSP11485)
- 0.385 501st OG (RSP11241)
Most genetically distant strains (Base Tree)
- 0.414 JL yellow (RSP11075)
- 0.400 Cbot-2019-005 (RSP11133)
- 0.386 Sour Raspberry (RSP10551)
- 0.375 Carmagnola (RSP10979)
- 0.373 Blueberry Cheesecake (RSP10672)
- 0.373 CST (RSP11002)
- 0.367 RKM-2018-003 (RSP11094)
- 0.362 RKM-2018-002 (RSP11093)
- 0.362 Cbot-2019-004 (RSP11132)
- 0.350 Blue Dream (RSP11033)
- 0.345 RKM-2018-022 (RSP11114)
- 0.345 Feral (RSP10890)
- 0.338 RKM-2018-009 (RSP11100)
- 0.337 Kush Hemp E1 (RSP11128)
- 0.333 RKM-2018-006 (RSP11097)
- 0.333 Black Beauty (RSP11035)
- 0.333 Blueberry Cheesecake (RSP10680)
- 0.333 QUEEN JESUS (RSP10105)
- 0.332 Cherry (RSP11142)
- 0.330 RKM-2018-033 (RSP11125)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 11
- Concordance:
- 10
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4