Santhica27

RSP 11046

Grower: CSU

General Information

Sample Name
Santhica27-2
Accession Date
January 7, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type IV

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 2.38%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0516
male female RSP11046

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
aPT1

UniProt

c.95_97delGTT p.Cys32del disruptive inframe deletion moderate contig121 2835800

IGV: Start, Jump

ATGT/A
NGS:
0.118
C90:
0.311
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.006 Santhica27 (RSP11047)
  2. 0.099 Santhica27 (RSP10056)
  3. 0.121 Santhica 27 (RSP10665)
  4. 0.179 USO 31 (RSP10983)
  5. 0.179 Tygra (RSP10667)
  6. 0.179 Fedora 17 (RSP10661)
  7. 0.186 USO31 (RSP10233)
  8. 0.187 Monoica (RSP10241)
  9. 0.188 Lovrin (RSP10658)
  10. 0.190 USO 31 (RSP10981)
  11. 0.201 Futura 75 (RSP10664)
  12. 0.204 Fedora 17 (RSP11203)
  13. 0.207 Carmagnola USO 31 (RSP11204)
  14. 0.212 Diana (RSP10235)
  15. 0.213 Carmagnola (RSP11039)
  16. 0.213 Carmagnola (RSP10982)
  17. 0.214 Tisza (RSP10659)
  18. 0.215 Ivory (RSP10668)
  19. 0.217 Carmagnola (RSP11037)
  20. 0.219 Carmagnola (RSP10977)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.003 Santhica27 (RSP11047)
  2. 0.178 Fedora 17 (RSP10661)
  3. 0.185 USO 31 (RSP10981)
  4. 0.186 Lovrin (RSP10658)
  5. 0.188 Monoica (RSP10241)
  6. 0.192 Tygra (RSP10667)
  7. 0.196 Futura 75 (RSP10664)
  8. 0.211 Tisza (RSP10659)
  9. 0.212 Ivory (RSP10668)
  10. 0.218 Carmagnola (RSP11037)
  11. 0.223 Carmagnola (RSP10979)
  12. 0.230 Tisza (RSP11044)
  13. 0.245 KYRG-11 (RSP11051)
  14. 0.250 Kyrgyz Gold (RSP11054)
  15. 0.253 Jiangji (RSP10653)
  16. 0.268 Feral (RSP10890)
  17. 0.304 Kimbo Slice (RSP10997)
  18. 0.309 RKM-2018-029 (RSP11121)
  19. 0.313 Durban Poison (RSP11014)
  20. 0.314 Recon (RSP10755)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.456 Cherry Blossom (RSP11318)
  2. 0.451 Cherry Blossom (RSP11312)
  3. 0.438 Cherry Blossom (RSP11323)
  4. 0.438 Cherry Blossom (RSP11311)
  5. 0.438 Cherry Blossom (RSP11298)
  6. 0.436 Cherry Blossom (RSP11300)
  7. 0.429 Cherry Blossom (RSP11328)
  8. 0.428 Cherry Blossom (RSP11331)
  9. 0.426 Cherry Blossom (RSP11301)
  10. 0.425 Cherry Blossom (RSP11334)
  11. 0.425 Unknown- Cherry Wine - 001 (RSP11268)
  12. 0.418 Cherry Blossom (RSP11310)
  13. 0.416 Cherry Blossom (RSP11309)
  14. 0.414 Cherry Blossom (RSP11319)
  15. 0.413 Cherry Blossom (RSP11316)
  16. 0.410 Cherry Blossom (RSP11333)
  17. 0.410 Cherry Blossom (RSP11314)
  18. 0.409 Cherry Blossom (RSP11302)
  19. 0.407 Escape Velocity (RSP11165)
  20. 0.406 Cherry Blossom (RSP11329)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.415 Cbot-2019-005 (RSP11133)
  2. 0.375 RKM-2018-002 (RSP11093)
  3. 0.374 JL yellow (RSP11075)
  4. 0.369 RKM-2018-028 (RSP11120)
  5. 0.369 Skunk 18 (RSP11038)
  6. 0.368 RKM-2018-022 (RSP11114)
  7. 0.365 RKM-2018-006 (RSP11097)
  8. 0.365 RKM-2018-023 (RSP11115)
  9. 0.359 Kush Hemp E1 (RSP11128)
  10. 0.358 RKM-2018-018 (RSP11110)
  11. 0.358 Hermaphrodite Research Sample1 (RSP11049)
  12. 0.357 RKM-2018-019 (RSP11111)
  13. 0.357 Cbot-2019-004 (RSP11132)
  14. 0.356 Blue Dream (RSP11033)
  15. 0.356 Cherry (RSP11142)
  16. 0.355 RKM-2018-027 (RSP11119)
  17. 0.355 Cbot-2019-001 (RSP11129)
  18. 0.354 RKM-2018-003 (RSP11094)
  19. 0.354 Cherry (RSP11143)
  20. 0.352 Cbot-2019-006 (RSP11134)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448809
Overlapping SNPs:
86
Concordance:
59

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
7
Concordance:
6

Blockchain Registration Information

Transaction ID
709801541ccfce7d058704f3c18ad2e3cd2d8ae8cc8ad88c6244a260a81f6684
Stamping Certificate
Download PDF (855.2 KB)
SHASUM Hash
23ef9182942c330f668a10377ef97b7fa8141771170614866f1c52db0d4e8bb1
QR code for RSP11046

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