USO31
RSP 10233
Grower: CSU
General Information
- Sample Name
- USO31-3
- Accession Date
- May 12, 2016
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
aPT4 | c.470T>C | p.Leu157Ser | missense variant | moderate | contig121 | 2830665 | T/C |
|
aPT4 | c.517A>T | p.Ile173Leu | missense variant & splice region variant | moderate | contig121 | 2830795 | A/T |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
aPT1 | c.715G>C | p.Ala239Pro | missense variant | moderate | contig121 | 2841350 | G/C |
|
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.958G>A | p.Gly320Ser | missense variant | moderate | contig121 | 2842731 | G/A |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.150 USO 31 (RSP10983)
- 0.158 USO 31 (RSP10981)
- 0.162 Lovrin (RSP10658)
- 0.165 Santhica 27 (RSP10665)
- 0.177 Santhica27 (RSP10056)
- 0.186 Santhica27 (RSP11046)
- 0.189 Tygra (RSP10667)
- 0.193 Santhica27 (RSP11047)
- 0.195 Monoica (RSP10241)
- 0.196 Fedora 17 (RSP10661)
- 0.198 Futura 75 (RSP10664)
- 0.198 Fedora 17 (RSP11203)
- 0.200 Carmagnola USO 31 (RSP11204)
- 0.213 Ivory (RSP10668)
- 0.214 Diana (RSP10235)
- 0.214 Carmaleonte (RSP11207)
- 0.221 Tisza (RSP10659)
- 0.229 KYRG-21 (RSP11053)
- 0.230 Carmagnola (RSP10978)
- 0.231 Carmagnola (RSP10976)
Nearest genetic relatives (Base Tree)
- 0.165 USO 31 (RSP10981)
- 0.176 Lovrin (RSP10658)
- 0.189 Monoica (RSP10241)
- 0.195 Tygra (RSP10667)
- 0.196 Santhica27 (RSP11047)
- 0.197 Futura 75 (RSP10664)
- 0.199 Fedora 17 (RSP10661)
- 0.203 Ivory (RSP10668)
- 0.224 Tisza (RSP10659)
- 0.235 Tisza (RSP11044)
- 0.243 Carmagnola (RSP10979)
- 0.250 Carmagnola (RSP11037)
- 0.253 Kyrgyz Gold (RSP11054)
- 0.257 KYRG-11 (RSP11051)
- 0.261 Jiangji (RSP10653)
- 0.263 Feral (RSP10890)
- 0.312 RKM-2018-029 (RSP11121)
- 0.323 Kimbo Slice (RSP10997)
- 0.323 Recon (RSP10755)
- 0.325 RKM-2018-034 (RSP11126)
Most genetically distant strains (All Samples)
- 0.468 Cherry Blossom (RSP11312)
- 0.460 Cherry Blossom (RSP11318)
- 0.459 Cherry Blossom (RSP11323)
- 0.451 Cherry Blossom (RSP11300)
- 0.451 Cherry Blossom (RSP11331)
- 0.450 Cherry Blossom (RSP11311)
- 0.449 Cherry Blossom (RSP11301)
- 0.438 Cherry Blossom (RSP11315)
- 0.435 Cherry Blossom (RSP11298)
- 0.434 Cherry Blossom (RSP11325)
- 0.434 Cherry Blossom (RSP11308)
- 0.433 Cherry Blossom (RSP11319)
- 0.433 Cherry Blossom (RSP11299)
- 0.433 Cherry Blossom (RSP11322)
- 0.433 Cherry Blossom (RSP11334)
- 0.432 Cherry Blossom (RSP11306)
- 0.432 Cherry Blossom (RSP11335)
- 0.430 Cherry Blossom (RSP11327)
- 0.430 Cherry Blossom (RSP11332)
- 0.428 Cherry Blossom (RSP11316)
Most genetically distant strains (Base Tree)
- 0.397 Cbot-2019-005 (RSP11133)
- 0.388 Cbot-2019-001 (RSP11129)
- 0.385 RKM-2018-028 (RSP11120)
- 0.378 RKM-2018-018 (RSP11110)
- 0.377 Cherry (RSP11143)
- 0.373 JL yellow (RSP11075)
- 0.372 UP Sunrise (RSP10989)
- 0.372 Skunk 18 (RSP11038)
- 0.371 Hermaphrodite Research Sample1 (RSP11049)
- 0.371 RKM-2018-006 (RSP11097)
- 0.369 RKM-2018-002 (RSP11093)
- 0.368 RKM-2018-022 (RSP11114)
- 0.368 RKM-2018-003 (RSP11094)
- 0.367 Cbot-2019-004 (RSP11132)
- 0.363 Cherry (RSP11142)
- 0.363 RKM-2018-019 (RSP11111)
- 0.362 RKM-2018-023 (RSP11115)
- 0.358 Gold Cracker (RSP11048)
- 0.357 RKM-2018-032 (RSP11124)
- 0.356 RKM-2018-009 (RSP11100)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 123
- Concordance:
- 88
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 11
- Concordance:
- 10
Blockchain Registration Information
- Transaction ID
-
3a666144f2508230
dd6174634d65a30b 35988ca82942d9c0 401a4b90b09289eb - Stamping Certificate
- Download PDF (864.3 KB)
- SHASUM Hash
-
0cd30ec577accaf5
c07e0c2141ab2ee0 f252ef8c4e97e75b b9205e0417de9c54