Cherry Blossom
RSP 11299
Grower: Yabba Cannaba
General Information
- Sample Name
- CA4
- Accession Date
- October 16, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.428_429ins |
p.Val144fs | frameshift variant | high | contig700 | 2721244 |
G/GTGACCCATA |
|
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.744+1_744+ |
splice donor variant & splice region variant & intron variant | high | contig121 | 2831022 |
GGTAATTTATTT |
|
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.087 Cherry Blossom (RSP11331)
- 0.137 Unknown- Cherry Wine - 005 (RSP11272)
- 0.157 Cherry Blossom (RSP11310)
- 0.163 Cherry Blossom (RSP11315)
- 0.166 Cherry Blossom (RSP11302)
- 0.169 Cherry Wine (RSP11307)
- 0.170 Cherry Wine (RSP11305)
- 0.173 Cherry Blossom (RSP11330)
- 0.179 Cherry Blossom (RSP11304)
- 0.179 Cherry Blossom (RSP11316)
- 0.182 Cherry Blossom (RSP11320)
- 0.191 Cherry Blossom (RSP11324)
- 0.191 FL30 (RSP11361)
- 0.199 Cherry Blossom (RSP11329)
- 0.200 Blueberry Cheesecake (RSP10684)
- 0.201 Cherry Blossom (RSP11332)
- 0.202 Midnight (RSP10941)
- 0.203 Cherry Blossom (RSP11327)
- 0.204 Doug s Varin (RSP11243)
- 0.207 Cherry Blossom (RSP11319)
Nearest genetic relatives (Base Tree)
- 0.210 Blueberry Cheesecake (RSP10684)
- 0.278 Liberty Haze (RSP11000)
- 0.289 Durban Poison (RSP11014)
- 0.301 UP Sunrise (RSP10989)
- 0.306 Cherry (RSP11143)
- 0.310 QUEEN JESUS (RSP10105)
- 0.312 Cbot-2019-001 (RSP11129)
- 0.319 Cbot-2019-004 (RSP11132)
- 0.327 Recon (RSP10755)
- 0.343 RKM-2018-031 (RSP11123)
- 0.347 Tygra (RSP10667)
- 0.347 Golden Goat 2 (RSP10991)
- 0.347 RKM-2018-005 (RSP11096)
- 0.352 RKM-2018-027 (RSP11119)
- 0.352 RKM-2018-003 (RSP11094)
- 0.357 Hermaphrodite ResearchSample2 (RSP11050)
- 0.358 Kimbo Slice (RSP10997)
- 0.359 Blueberry Cheesecake (RSP10672)
- 0.359 Cherry (RSP11142)
- 0.361 RKM-2018-032 (RSP11124)
Most genetically distant strains (All Samples)
- 0.467 80E (RSP11213)
- 0.454 JL yellow (RSP11075)
- 0.453 White Label 1 (RSP11336)
- 0.452 RKM-2018-026 (RSP11118)
- 0.451 80E (RSP11211)
- 0.444 Feral (RSP11205)
- 0.442 Chem 91 (RSP11185)
- 0.438 USO 31 (RSP10983)
- 0.436 Feral (RSP10891)
- 0.435 Feral (RSP10890)
- 0.433 Garlic (RSP11341)
- 0.433 USO31 (RSP10233)
- 0.432 Red Eye OG (RSP11190)
- 0.432 80E (RSP11212)
- 0.431 JL 3rd Gen Mother (RSP11214)
- 0.431 Feral (RSP10892)
- 0.430 Skywalker OG (RSP10837)
- 0.429 Abacus (RSP11266)
- 0.429 RKM-2018-024 (RSP11116)
- 0.424 JL 4th Gen 5 (RSP11199)
Most genetically distant strains (Base Tree)
- 0.461 RKM-2018-026 (RSP11118)
- 0.456 JL yellow (RSP11075)
- 0.441 Skywalker OG (RSP10837)
- 0.433 Feral (RSP10890)
- 0.431 USO 31 (RSP10981)
- 0.425 Carmagnola (RSP11037)
- 0.422 Kush Hemp E1 (RSP11128)
- 0.422 RKM-2018-002 (RSP11093)
- 0.421 Santhica27 (RSP11047)
- 0.421 Tisza (RSP11044)
- 0.418 Ivory (RSP10668)
- 0.415 Fedora 17 (RSP10661)
- 0.414 Monoica (RSP10241)
- 0.413 RKM-2018-022 (RSP11114)
- 0.411 KYRG-11 (RSP11051)
- 0.406 Futura 75 (RSP10664)
- 0.406 Kyrgyz Gold (RSP11054)
- 0.406 Lovrin (RSP10658)
- 0.405 Skunk 18 (RSP11038)
- 0.405 Carmagnola (RSP10979)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 66
- Concordance:
- 44
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 4
Blockchain Registration Information
- Transaction ID
-
4b32f76228f2fb3d
0f63bfe779c5d927 812c2d647c408ac8 8a5b0ba512f1d9b3 - Stamping Certificate
- Download PDF (849.2 KB)
- SHASUM Hash
-
efafe77d8572429b
c76b5ffd2d583ade 23b7014fb03c4767 d0a8d9137fa19c6a