Advanced Strain Search

Cherry Blossom

RSP 11299

Grower: Yabba Cannaba

General Information

Sample Name
CA4
Accession Date
October 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.15%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0522
male female RSP11299

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.428_429insTGGGCTGAGTGAGTATGGGTCA p.Val144fs frameshift variant high contig700 2721244

IGV: Start, Jump

G/GTGACCCATACTCACTCAGCCCA
NGS:
0.002
C90:
0.000
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.744+1_744+19delGTAATTTATTTTATTATAA splice donor variant & splice region variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/G
NGS:
0.096
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.087 Cherry Blossom (RSP11331)
  2. 0.137 Unknown- Cherry Wine - 005 (RSP11272)
  3. 0.157 Cherry Blossom (RSP11310)
  4. 0.163 Cherry Blossom (RSP11315)
  5. 0.166 Cherry Blossom (RSP11302)
  6. 0.169 Cherry Wine (RSP11307)
  7. 0.170 Cherry Wine (RSP11305)
  8. 0.173 Cherry Blossom (RSP11330)
  9. 0.179 Cherry Blossom (RSP11304)
  10. 0.179 Cherry Blossom (RSP11316)
  11. 0.182 Cherry Blossom (RSP11320)
  12. 0.191 Cherry Blossom (RSP11324)
  13. 0.191 FL30 (RSP11361)
  14. 0.199 Cherry Blossom (RSP11329)
  15. 0.200 Blueberry Cheesecake (RSP10684)
  16. 0.201 Cherry Blossom (RSP11332)
  17. 0.202 Midnight (RSP10941)
  18. 0.203 Cherry Blossom (RSP11327)
  19. 0.204 Doug s Varin (RSP11243)
  20. 0.207 Cherry Blossom (RSP11319)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.210 Blueberry Cheesecake (RSP10684)
  2. 0.278 Liberty Haze (RSP11000)
  3. 0.289 Durban Poison (RSP11014)
  4. 0.301 UP Sunrise (RSP10989)
  5. 0.306 Cherry (RSP11143)
  6. 0.310 QUEEN JESUS (RSP10105)
  7. 0.312 Cbot-2019-001 (RSP11129)
  8. 0.319 Cbot-2019-004 (RSP11132)
  9. 0.327 Recon (RSP10755)
  10. 0.343 RKM-2018-031 (RSP11123)
  11. 0.347 Tygra (RSP10667)
  12. 0.347 Golden Goat 2 (RSP10991)
  13. 0.347 RKM-2018-005 (RSP11096)
  14. 0.352 RKM-2018-027 (RSP11119)
  15. 0.352 RKM-2018-003 (RSP11094)
  16. 0.357 Hermaphrodite ResearchSample2 (RSP11050)
  17. 0.358 Kimbo Slice (RSP10997)
  18. 0.359 Blueberry Cheesecake (RSP10672)
  19. 0.359 Cherry (RSP11142)
  20. 0.361 RKM-2018-032 (RSP11124)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.467 80E (RSP11213)
  2. 0.454 JL yellow (RSP11075)
  3. 0.453 White Label 1 (RSP11336)
  4. 0.452 RKM-2018-026 (RSP11118)
  5. 0.451 80E (RSP11211)
  6. 0.444 Feral (RSP11205)
  7. 0.442 Chem 91 (RSP11185)
  8. 0.438 USO 31 (RSP10983)
  9. 0.436 Feral (RSP10891)
  10. 0.435 Feral (RSP10890)
  11. 0.433 Garlic (RSP11341)
  12. 0.433 USO31 (RSP10233)
  13. 0.432 Red Eye OG (RSP11190)
  14. 0.432 80E (RSP11212)
  15. 0.431 JL 3rd Gen Mother (RSP11214)
  16. 0.431 Feral (RSP10892)
  17. 0.430 Skywalker OG (RSP10837)
  18. 0.429 Abacus (RSP11266)
  19. 0.429 RKM-2018-024 (RSP11116)
  20. 0.424 JL 4th Gen 5 (RSP11199)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.461 RKM-2018-026 (RSP11118)
  2. 0.456 JL yellow (RSP11075)
  3. 0.441 Skywalker OG (RSP10837)
  4. 0.433 Feral (RSP10890)
  5. 0.431 USO 31 (RSP10981)
  6. 0.425 Carmagnola (RSP11037)
  7. 0.422 Kush Hemp E1 (RSP11128)
  8. 0.422 RKM-2018-002 (RSP11093)
  9. 0.421 Santhica27 (RSP11047)
  10. 0.421 Tisza (RSP11044)
  11. 0.418 Ivory (RSP10668)
  12. 0.415 Fedora 17 (RSP10661)
  13. 0.414 Monoica (RSP10241)
  14. 0.413 RKM-2018-022 (RSP11114)
  15. 0.411 KYRG-11 (RSP11051)
  16. 0.406 Futura 75 (RSP10664)
  17. 0.406 Kyrgyz Gold (RSP11054)
  18. 0.406 Lovrin (RSP10658)
  19. 0.405 Skunk 18 (RSP11038)
  20. 0.405 Carmagnola (RSP10979)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450157
Overlapping SNPs:
66
Concordance:
44

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495227
Overlapping SNPs:
5
Concordance:
4

Blockchain Registration Information

Transaction ID
4b32f76228f2fb3d0f63bfe779c5d927812c2d647c408ac88a5b0ba512f1d9b3
Stamping Certificate
Download PDF (849.2 KB)
SHASUM Hash
efafe77d8572429bc76b5ffd2d583ade23b7014fb03c4767d0a8d9137fa19c6a
QR code for RSP11299

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