Monoica
RSP 10241
Grower: CSU
General Information
- Sample Name
- Monoica-2
- Accession Date
- May 12, 2016
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-4a |
c.261_264dup |
p.Met89fs | frameshift variant | high | contig700 | 1937671 | A/AGTAC |
|
PKSG-4a | c.617A>G | p.Tyr206Cys | missense variant | moderate | contig700 | 1938028 | A/G |
|
PKSG-4a |
c.626_628del |
p.Asn209del | disruptive inframe deletion | moderate | contig700 | 1938032 | CAAT/C |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1944442 | A/C |
|
PKSG-2a | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1944445 | A/C |
|
PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
|
PKSG-2a | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1944456 | G/C |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2b | c.67A>T | p.Ile23Phe | missense variant | moderate | contig700 | 1951815 | T/A | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.517A>T | p.Ile173Leu | missense variant & splice region variant | moderate | contig121 | 2830795 | A/T |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.679G>C | p.Gly227Arg | missense variant | moderate | contig95 | 1990632 | G/C |
|
Nearest genetic relatives (All Samples)
- 0.177 Santhica27 (RSP10056)
- 0.187 Santhica27 (RSP11046)
- 0.189 Futura 75 (RSP10664)
- 0.189 Lovrin (RSP10658)
- 0.190 USO 31 (RSP10983)
- 0.190 Santhica 27 (RSP10665)
- 0.193 Santhica27 (RSP11047)
- 0.195 USO31 (RSP10233)
- 0.201 USO 31 (RSP10981)
- 0.208 Fedora 17 (RSP10661)
- 0.209 Tisza (RSP10659)
- 0.209 Fedora 17 (RSP11203)
- 0.210 Diana (RSP10235)
- 0.217 KYRG-151 (RSP11052)
- 0.219 Ivory (RSP10668)
- 0.220 Tygra (RSP10667)
- 0.226 Tisza (RSP11044)
- 0.226 Carmagnola (RSP10978)
- 0.227 Carmagnola USO 31 (RSP11204)
- 0.230 Tisza (RSP11045)
Nearest genetic relatives (Base Tree)
- 0.187 Santhica27 (RSP11047)
- 0.189 Lovrin (RSP10658)
- 0.192 Futura 75 (RSP10664)
- 0.196 USO 31 (RSP10981)
- 0.199 Fedora 17 (RSP10661)
- 0.211 Tisza (RSP10659)
- 0.216 Tygra (RSP10667)
- 0.218 Ivory (RSP10668)
- 0.225 Tisza (RSP11044)
- 0.236 Carmagnola (RSP10979)
- 0.246 Carmagnola (RSP11037)
- 0.246 Kyrgyz Gold (RSP11054)
- 0.249 KYRG-11 (RSP11051)
- 0.256 Feral (RSP10890)
- 0.258 Jiangji (RSP10653)
- 0.302 Hermaphrodite ResearchSample2 (RSP11050)
- 0.303 Liberty Haze (RSP11000)
- 0.303 Recon (RSP10755)
- 0.307 RKM-2018-029 (RSP11121)
- 0.319 Kimbo Slice (RSP10997)
Most genetically distant strains (All Samples)
- 0.459 Cherry Blossom (RSP11312)
- 0.457 Cherry Blossom (RSP11318)
- 0.454 Cherry Blossom (RSP11323)
- 0.450 Cherry Blossom (RSP11300)
- 0.448 Cherry Blossom (RSP11311)
- 0.434 Cherry Blossom (RSP11301)
- 0.434 Cherry Blossom (RSP11331)
- 0.434 Unknown- Cherry Wine - 001 (RSP11268)
- 0.429 Wife (RSP11148)
- 0.427 Cherry Blossom (RSP11298)
- 0.427 Cherry Blossom (RSP11316)
- 0.422 Avidekel (RSP10938)
- 0.422 Cherry Blossom (RSP11274)
- 0.422 Queen Dream CBG (RSP11295)
- 0.421 Cherry Blossom (RSP11319)
- 0.417 Cherry Blossom (RSP11334)
- 0.416 Cherry Blossom (RSP11328)
- 0.415 Cherry Blossom (RSP11325)
- 0.410 Cherry Blossom (RSP11332)
- 0.410 Cherry Blossom (RSP11299)
Most genetically distant strains (Base Tree)
- 0.410 Cbot-2019-005 (RSP11133)
- 0.382 RKM-2018-018 (RSP11110)
- 0.380 Skunk 18 (RSP11038)
- 0.376 RKM-2018-028 (RSP11120)
- 0.374 RKM-2018-002 (RSP11093)
- 0.373 RKM-2018-006 (RSP11097)
- 0.370 UP Sunrise (RSP10989)
- 0.367 JL yellow (RSP11075)
- 0.365 Hermaphrodite Research Sample1 (RSP11049)
- 0.364 RKM-2018-032 (RSP11124)
- 0.363 RKM-2018-022 (RSP11114)
- 0.361 Cbot-2019-001 (RSP11129)
- 0.359 Cherry (RSP11143)
- 0.356 Golden Goat 2 (RSP10991)
- 0.354 Cherry (RSP11142)
- 0.354 Sour Raspberry (RSP10551)
- 0.354 RKM-2018-023 (RSP11115)
- 0.352 Cbot-2019-004 (RSP11132)
- 0.351 RKM-2018-019 (RSP11111)
- 0.351 RKM-2018-005 (RSP11096)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 113
- Concordance:
- 81
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 17
- Concordance:
- 15
Blockchain Registration Information
- Transaction ID
-
413a5ce57542e7fb
b20d4a69ef0a7519 98e2477d955b29e2 58747c06ec9c8e50 - Stamping Certificate
- Download PDF (851.2 KB)
- SHASUM Hash
-
ef0d19fb06464992
023403e3ee5a71ee b9703652d78382fa e491ca5f5f5b74a2