Advanced Strain Search

IUL3

SRR 14708252

Grower: Lanzhou University, Guangpeng Ren

General Information

Accession Date
May 31, 2021
Reported Plant Sex
unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.34%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0254
male female SRR14708252

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
EMF1-2

UniProt

c.710A>C p.His237Pro missense variant moderate contig885 810

IGV: Start, Jump

A/C
NGS:
0.090
C90:
0.474
PHL-2 c.985T>A p.Phe329Ile missense variant moderate contig2621 340263

IGV: Start, Jump

T/A
NGS:
0.000
C90:
0.000
PHL-2 c.1364A>G p.Asp455Gly missense variant moderate contig2621 340642

IGV: Start, Jump

A/G
NGS:
0.000
C90:
0.000
PHL-2 c.1381T>G p.Phe461Val missense variant moderate contig2621 340659

IGV: Start, Jump

T/G
NGS:
0.000
C90:
0.000
PHL-2 c.1438C>G p.Leu480Val missense variant moderate contig2621 340716

IGV: Start, Jump

C/G
NGS:
0.000
C90:
0.000
PHL-2 c.1450G>A p.Glu484Lys missense variant moderate contig2621 340728

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.000
PHL-2 c.2582C>G p.Pro861Arg missense variant moderate contig2621 342625

IGV: Start, Jump

C/G
NGS:
0.002
C90:
0.000
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PHL-2 c.2830A>G p.Asn944Asp missense variant moderate contig2621 342873

IGV: Start, Jump

A/G
NGS:
0.018
C90:
0.000
PHL-2 c.2834A>G p.Asn945Ser missense variant moderate contig2621 342877

IGV: Start, Jump

A/G
NGS:
0.004
C90:
0.000
PHL-2 c.3020T>A p.Ile1007Asn missense variant moderate contig2621 343063

IGV: Start, Jump

T/A
NGS:
0.000
C90:
0.000
PHL-2 c.3226G>A p.Val1076Ile missense variant moderate contig2621 343269

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.000
PHL-2 c.3373A>G p.Thr1125Ala missense variant moderate contig2621 343416

IGV: Start, Jump

A/G
NGS:
0.009
C90:
0.110
PHL-2 c.3379C>G p.His1127Asp missense variant moderate contig2621 343422

IGV: Start, Jump

C/G
NGS:
0.004
C90:
0.000
PHL-2 c.3380A>G p.His1127Arg missense variant moderate contig2621 343423

IGV: Start, Jump

A/G
NGS:
0.004
C90:
0.000
PHL-2 c.3381T>A p.His1127Gln missense variant moderate contig2621 343424

IGV: Start, Jump

T/A
NGS:
0.004
C90:
0.000
PHL-2 c.3467A>G p.Gln1156Arg missense variant moderate contig2621 343510

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.713
PHL-2 c.3543_3544insT p.Thr1182fs frameshift variant high contig2621 343586

IGV: Start, Jump

G/GT
NGS:
0.000
C90:
0.000
PHL-2 c.3552delG p.Lys1185fs frameshift variant high contig2621 343593

IGV: Start, Jump

CG/C
NGS:
0.004
C90:
0.000
PHL-2 c.3556_3557delAA p.Lys1186fs frameshift variant high contig2621 343598

IGV: Start, Jump

GAA/G
NGS:
0.013
C90:
0.096
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
FAD2-2

UniProt

c.126C>A p.Asp42Glu missense variant moderate contig83 1803243

IGV: Start, Jump

G/T
NGS:
0.009
C90:
0.000
ELF4

UniProt

c.395C>T p.Pro132Leu missense variant moderate contig869 622175

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.000
ELF3

UniProt

c.1803_1805delTCA p.His601del disruptive inframe deletion moderate contig97 244625

IGV: Start, Jump

ACAT/A
NGS:
0.092
C90:
0.000
aPT1

UniProt

c.958G>A p.Gly320Ser missense variant moderate contig121 2842731

IGV: Start, Jump

G/A
NGS:
0.004
C90:
0.000
AAE1-2

UniProt

c.948_949insA p.Asp317fs frameshift variant high contig81 209910

IGV: Start, Jump

C/CA
NGS:
0.050
C90:
0.000
AAE1-2

UniProt

c.952delC p.Gln318fs frameshift variant high contig81 209912

IGV: Start, Jump

AC/A
NGS:
0.050
C90:
0.000
AAE1-2

UniProt

c.953A>G p.Gln318Arg missense variant moderate contig81 209915

IGV: Start, Jump

A/G
NGS:
0.050
C90:
0.000
AAE1-2

UniProt

c.955C>T p.Arg319Cys missense variant moderate contig81 209917

IGV: Start, Jump

C/T
NGS:
0.050
C90:
0.000
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.116
C90:
0.000
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.099
C90:
0.861
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943
HDS-1

UniProt

c.35G>A p.Cys12Tyr missense variant moderate contig1891 889357

IGV: Start, Jump

C/T
NGS:
0.094
C90:
0.646
PIE1-2

UniProt

c.5932A>G p.Ile1978Val missense variant moderate contig1460 1185552

IGV: Start, Jump

T/C
NGS:
0.061
C90:
0.268
EMF2

UniProt

c.854T>C p.Ile285Thr missense variant moderate contig954 3052121

IGV: Start, Jump

T/C
NGS:
0.000
C90:
0.000
aPT4

UniProt

c.80A>G p.Lys27Arg missense variant moderate contig121 2828736

IGV: Start, Jump

A/G
NGS:
0.061
C90:
0.000
aPT4

UniProt

c.202T>A p.Leu68Ile missense variant moderate contig121 2828858

IGV: Start, Jump

T/A
NGS:
0.068
C90:
0.000
aPT4

UniProt

c.463G>T p.Val155Phe missense variant moderate contig121 2830658

IGV: Start, Jump

G/T
NGS:
0.002
C90:
0.000
aPT4

UniProt

c.471G>C p.Leu157Phe missense variant moderate contig121 2830666

IGV: Start, Jump

G/C
NGS:
0.002
C90:
0.000
AAE1-3

UniProt

c.388G>A p.Gly130Ser missense variant moderate contig976 1083637

IGV: Start, Jump

C/T
NGS:
0.007
C90:
0.000
AAE1-3

UniProt

c.382T>C p.Tyr128His missense variant moderate contig976 1083643

IGV: Start, Jump

A/G
NGS:
0.072
C90:
0.000
AAE1-3

UniProt

c.327G>T p.Trp109Cys missense variant moderate contig976 1083698

IGV: Start, Jump

C/A
NGS:
0.002
C90:
0.000
AAE1-3

UniProt

c.52G>A p.Gly18Ser missense variant moderate contig976 1084023

IGV: Start, Jump

C/T
NGS:
0.064
C90:
0.000
AAE1-3

UniProt

c.48C>A p.Cys16* stop gained high contig976 1084027

IGV: Start, Jump

G/T
NGS:
0.002
C90:
0.000
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.121
C90:
0.000

Nearest genetic relatives (All Samples)

clone distance sibling distance more distant
  1. 0.021 IUL2 (SRR14708253)
  2. 0.133 PCL1 (SRR14708246)
  3. 0.143 AOAC MI 542 (RSP11755)
  4. 0.143 AOAC MI 548 (RSP11757)
  5. 0.151 AOAC MI 533 (RSP11753)
  6. 0.152 Blue Dream (RSP11004)
  7. 0.154 Lift (RSP11378)
  8. 0.154 AOAC MI 569 (RSP11759)
  9. 0.155 Doug s Varin (RSP11243)
  10. 0.156 AOAC MI 599 (RSP11762)
  11. 0.158 AOAC MI 535 (RSP11754)
  12. 0.158 AOAC MI 504 (RSP11749)
  13. 0.160 AOAC MI 508 (RSP11750)
  14. 0.160 AOAC MI 532 (RSP11752)
  15. 0.160 AOAC MI 545 (RSP11756)
  16. 0.161 Serious Happiness (RSP10763)
  17. 0.162 AOAC MI 501 (RSP11748)
  18. 0.163 AOAC MI 588 (RSP11760)
  19. 0.167 AOAC MI 567 (RSP11758)
  20. 0.167 B52 (SRR14708255)

Nearest genetic relatives (Base Tree)

clone distance sibling distance more distant
  1. 0.191 Hermaphrodite ResearchSample2 (RSP11050)
  2. 0.193 Liberty Haze (RSP11000)
  3. 0.198 CST (RSP11002)
  4. 0.205 Recon (RSP10755)
  5. 0.206 RKM-2018-031 (RSP11123)
  6. 0.223 Tygra (RSP10667)
  7. 0.229 UP Sunrise (RSP10989)
  8. 0.238 Blueberry Cheesecake (RSP10684)
  9. 0.244 KYRG-11 (RSP11051)
  10. 0.247 RKM-2018-020 (RSP11112)
  11. 0.250 Kimbo Slice (RSP10997)
  12. 0.250 Durban Poison (RSP11014)
  13. 0.253 Cherry (RSP11142)
  14. 0.253 Blueberry Cheesecake (RSP10680)
  15. 0.254 Golden Goat 2 (RSP10991)
  16. 0.255 RKM-2018-022 (RSP11114)
  17. 0.260 Gold Cracker (RSP11048)
  18. 0.262 Hermaphrodite Research Sample1 (RSP11049)
  19. 0.264 Tisza (RSP11044)
  20. 0.266 RKM-2018-027 (RSP11119)

Most genetically distant strains (All Samples)

clone distance sibling distance more distant
  1. 0.435 JL 4th Gen 5 (RSP11199)
  2. 0.432 JL yellow (RSP11075)
  3. 0.403 Danny Noonan (RSP11070)
  4. 0.399 Feral (RSP11206)
  5. 0.392 Chematonic Cannatonic x Chemdawg (RSP11394)
  6. 0.378 CS (RSP11208)
  7. 0.375 JL 3rd Gen Mother (RSP11197)
  8. 0.373 JL 4th Gen 1 (RSP11193)
  9. 0.371 Kush Hemp E1 (RSP11128)
  10. 0.371 Carmaleonte (RSP11207)
  11. 0.370 80E (RSP11211)
  12. 0.366 Ivory (RSP10668)
  13. 0.366 R1in136 (SRR14708226)
  14. 0.365 Feral (RSP11205)
  15. 0.364 Tanao Sri-white 80 (RSP11621)
  16. 0.363 80E (RSP11213)
  17. 0.362 Cherry Blossom (RSP11323)
  18. 0.362 JL 3rd Gen Mother (RSP11214)
  19. 0.361 Cbot-2019-005 (RSP11133)
  20. 0.359 JL 4th Gen 4 (RSP11198)

Most genetically distant strains (Base Tree)

clone distance sibling distance more distant
  1. 0.442 JL yellow (RSP11075)
  2. 0.360 Cbot-2019-005 (RSP11133)
  3. 0.356 Kush Hemp E1 (RSP11128)
  4. 0.350 Fedora 17 (RSP10661)
  5. 0.343 RKM-2018-002 (RSP11093)
  6. 0.333 Carmagnola (RSP10979)
  7. 0.330 RKM-2018-033 (RSP11125)
  8. 0.328 Skunk 18 (RSP11038)
  9. 0.326 Monoica (RSP10241)
  10. 0.323 Ivory (RSP10668)
  11. 0.321 Skywalker OG (RSP10837)
  12. 0.314 Sour Raspberry (RSP10551)
  13. 0.309 Carmagnola (RSP11037)
  14. 0.308 Lovrin (RSP10658)
  15. 0.308 The Gift (RSP10988)
  16. 0.308 Feral (RSP10890)
  17. 0.300 RKM-2018-029 (RSP11121)
  18. 0.299 Cbot-2019-001 (RSP11129)
  19. 0.299 Futura 75 (RSP10664)
  20. 0.298 Blue Dream (RSP11033)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349033
Overlapping SNPs:
9
Concordance:
8

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495169
Overlapping SNPs:
2
Concordance:
2
QR code for SRR14708252

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