IUL3
SRR 14708252
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.985T>A | p.Phe329Ile | missense variant | moderate | contig2621 | 340263 | T/A |
|
PHL-2 | c.1364A>G | p.Asp455Gly | missense variant | moderate | contig2621 | 340642 | A/G |
|
PHL-2 | c.1381T>G | p.Phe461Val | missense variant | moderate | contig2621 | 340659 | T/G |
|
PHL-2 | c.1438C>G | p.Leu480Val | missense variant | moderate | contig2621 | 340716 | C/G |
|
PHL-2 | c.1450G>A | p.Glu484Lys | missense variant | moderate | contig2621 | 340728 | G/A |
|
PHL-2 | c.2582C>G | p.Pro861Arg | missense variant | moderate | contig2621 | 342625 | C/G |
|
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>G | p.Asn944Asp | missense variant | moderate | contig2621 | 342873 | A/G |
|
PHL-2 | c.2834A>G | p.Asn945Ser | missense variant | moderate | contig2621 | 342877 | A/G |
|
PHL-2 | c.3020T>A | p.Ile1007Asn | missense variant | moderate | contig2621 | 343063 | T/A |
|
PHL-2 | c.3226G>A | p.Val1076Ile | missense variant | moderate | contig2621 | 343269 | G/A |
|
PHL-2 | c.3373A>G | p.Thr1125Ala | missense variant | moderate | contig2621 | 343416 | A/G | |
PHL-2 | c.3379C>G | p.His1127Asp | missense variant | moderate | contig2621 | 343422 | C/G |
|
PHL-2 | c.3380A>G | p.His1127Arg | missense variant | moderate | contig2621 | 343423 | A/G |
|
PHL-2 | c.3381T>A | p.His1127Gln | missense variant | moderate | contig2621 | 343424 | T/A |
|
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PHL-2 |
c.3543_3544i |
p.Thr1182fs | frameshift variant | high | contig2621 | 343586 | G/GT |
|
PHL-2 | c.3552delG | p.Lys1185fs | frameshift variant | high | contig2621 | 343593 | CG/C |
|
PHL-2 |
c.3556_3557d |
p.Lys1186fs | frameshift variant | high | contig2621 | 343598 | GAA/G | |
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.126C>A | p.Asp42Glu | missense variant | moderate | contig83 | 1803243 | G/T |
|
ELF4 | c.395C>T | p.Pro132Leu | missense variant | moderate | contig869 | 622175 | G/A |
|
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
aPT1 | c.958G>A | p.Gly320Ser | missense variant | moderate | contig121 | 2842731 | G/A |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
EMF2 | c.854T>C | p.Ile285Thr | missense variant | moderate | contig954 | 3052121 | T/C |
|
aPT4 | c.80A>G | p.Lys27Arg | missense variant | moderate | contig121 | 2828736 | A/G |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 | c.463G>T | p.Val155Phe | missense variant | moderate | contig121 | 2830658 | G/T |
|
aPT4 | c.471G>C | p.Leu157Phe | missense variant | moderate | contig121 | 2830666 | G/C |
|
AAE1-3 | c.388G>A | p.Gly130Ser | missense variant | moderate | contig976 | 1083637 | C/T |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.327G>T | p.Trp109Cys | missense variant | moderate | contig976 | 1083698 | C/A |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.48C>A | p.Cys16* | stop gained | high | contig976 | 1084027 | G/T |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.021 IUL2 (SRR14708253)
- 0.133 PCL1 (SRR14708246)
- 0.143 AOAC MI 542 (RSP11755)
- 0.143 AOAC MI 548 (RSP11757)
- 0.151 AOAC MI 533 (RSP11753)
- 0.152 Blue Dream (RSP11004)
- 0.154 Lift (RSP11378)
- 0.154 AOAC MI 569 (RSP11759)
- 0.155 Doug s Varin (RSP11243)
- 0.156 AOAC MI 599 (RSP11762)
- 0.158 AOAC MI 535 (RSP11754)
- 0.158 AOAC MI 504 (RSP11749)
- 0.160 AOAC MI 508 (RSP11750)
- 0.160 AOAC MI 532 (RSP11752)
- 0.160 AOAC MI 545 (RSP11756)
- 0.161 Serious Happiness (RSP10763)
- 0.162 AOAC MI 501 (RSP11748)
- 0.163 AOAC MI 588 (RSP11760)
- 0.167 AOAC MI 567 (RSP11758)
- 0.167 B52 (SRR14708255)
Nearest genetic relatives (Base Tree)
- 0.191 Hermaphrodite ResearchSample2 (RSP11050)
- 0.193 Liberty Haze (RSP11000)
- 0.198 CST (RSP11002)
- 0.205 Recon (RSP10755)
- 0.206 RKM-2018-031 (RSP11123)
- 0.223 Tygra (RSP10667)
- 0.229 UP Sunrise (RSP10989)
- 0.238 Blueberry Cheesecake (RSP10684)
- 0.244 KYRG-11 (RSP11051)
- 0.247 RKM-2018-020 (RSP11112)
- 0.250 Kimbo Slice (RSP10997)
- 0.250 Durban Poison (RSP11014)
- 0.253 Cherry (RSP11142)
- 0.253 Blueberry Cheesecake (RSP10680)
- 0.254 Golden Goat 2 (RSP10991)
- 0.255 RKM-2018-022 (RSP11114)
- 0.260 Gold Cracker (RSP11048)
- 0.262 Hermaphrodite Research Sample1 (RSP11049)
- 0.264 Tisza (RSP11044)
- 0.266 RKM-2018-027 (RSP11119)
Most genetically distant strains (All Samples)
- 0.435 JL 4th Gen 5 (RSP11199)
- 0.432 JL yellow (RSP11075)
- 0.403 Danny Noonan (RSP11070)
- 0.399 Feral (RSP11206)
- 0.392 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.378 CS (RSP11208)
- 0.375 JL 3rd Gen Mother (RSP11197)
- 0.373 JL 4th Gen 1 (RSP11193)
- 0.371 Kush Hemp E1 (RSP11128)
- 0.371 Carmaleonte (RSP11207)
- 0.370 80E (RSP11211)
- 0.366 Ivory (RSP10668)
- 0.366 R1in136 (SRR14708226)
- 0.365 Feral (RSP11205)
- 0.364 Tanao Sri-white 80 (RSP11621)
- 0.363 80E (RSP11213)
- 0.362 Cherry Blossom (RSP11323)
- 0.362 JL 3rd Gen Mother (RSP11214)
- 0.361 Cbot-2019-005 (RSP11133)
- 0.359 JL 4th Gen 4 (RSP11198)
Most genetically distant strains (Base Tree)
- 0.442 JL yellow (RSP11075)
- 0.360 Cbot-2019-005 (RSP11133)
- 0.356 Kush Hemp E1 (RSP11128)
- 0.350 Fedora 17 (RSP10661)
- 0.343 RKM-2018-002 (RSP11093)
- 0.333 Carmagnola (RSP10979)
- 0.330 RKM-2018-033 (RSP11125)
- 0.328 Skunk 18 (RSP11038)
- 0.326 Monoica (RSP10241)
- 0.323 Ivory (RSP10668)
- 0.321 Skywalker OG (RSP10837)
- 0.314 Sour Raspberry (RSP10551)
- 0.309 Carmagnola (RSP11037)
- 0.308 Lovrin (RSP10658)
- 0.308 The Gift (RSP10988)
- 0.308 Feral (RSP10890)
- 0.300 RKM-2018-029 (RSP11121)
- 0.299 Cbot-2019-001 (RSP11129)
- 0.299 Futura 75 (RSP10664)
- 0.298 Blue Dream (RSP11033)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 9
- Concordance:
- 8
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2