Tak-HN
RSP 11618
Grower: Plant Genomic Laboratory, Medicinal Plant Research Institute
General Information
- Sample Name
- CS Sativa
- Accession Date
- July 20, 2020
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2a | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1945149 | C/T |
|
PKSG-2a | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1945150 | A/C |
|
PKSG-2a | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1945160 | A/G |
|
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.557+2T>C | splice donor variant & intron variant | high | contig700 | 2721114 | A/G |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.418G>T | p.Asp140Tyr | missense variant | moderate | contig700 | 2721255 | C/A |
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.76C>A | p.Pro26Thr | missense variant | moderate | contig380 | 289205 | G/T |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 | c.218A>G | p.Asn73Ser | missense variant | moderate | contig121 | 2828874 | A/G |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.626A>G | p.Asn209Ser | missense variant | moderate | contig121 | 2830904 | A/G |
|
aPT4 | c.656G>T | p.Cys219Phe | missense variant | moderate | contig121 | 2830934 | G/T |
|
aPT4 | c.1127C>A | p.Pro376Gln | missense variant & splice region variant | moderate | contig121 | 2833312 | C/A |
|
aPT1 | c.160A>C | p.Thr54Pro | missense variant | moderate | contig121 | 2835867 | A/C | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.188 R3 (RSP11616)
- 0.191 R1 (RSP11483)
- 0.207 R2 (RSP11615)
- 0.214 Lift (RSP11378)
- 0.215 R4 (RSP11617)
- 0.226 KYRG-151 (RSP11052)
- 0.229 Durban Poison 1 (RSP11013)
- 0.234 Doug s Varin (RSP11243)
- 0.238 Domnesia (RSP11184)
- 0.240 Jiangji (RSP10653)
- 0.241 KYRG-21 (RSP11053)
- 0.242 Badger (RSP11614)
- 0.242 Electra (RSP11366)
- 0.246 Tisza (RSP10659)
- 0.247 Serious Happiness (RSP10763)
- 0.248 JL 4th Gen 7 (RSP11153)
- 0.249 Squirrel Tail 31 (RSP11485)
- 0.251 Kyrgyz Gold (RSP11054)
- 0.253 Miss X (RSP10999)
- 0.253 Blue Dream (RSP11010)
Nearest genetic relatives (Base Tree)
- 0.238 Jiangji (RSP10653)
- 0.256 Tisza (RSP11044)
- 0.258 Liberty Haze (RSP11000)
- 0.259 Tisza (RSP10659)
- 0.261 Kyrgyz Gold (RSP11054)
- 0.264 Recon (RSP10755)
- 0.271 Futura 75 (RSP10664)
- 0.272 Tygra (RSP10667)
- 0.274 Durban Poison (RSP11014)
- 0.277 KYRG-11 (RSP11051)
- 0.284 Blueberry Cheesecake (RSP10684)
- 0.288 Carmagnola (RSP10979)
- 0.289 Feral (RSP10890)
- 0.291 Monoica (RSP10241)
- 0.291 Santhica27 (RSP11047)
- 0.293 Hermaphrodite ResearchSample2 (RSP11050)
- 0.296 Kimbo Slice (RSP10997)
- 0.296 USO 31 (RSP10981)
- 0.296 Carmagnola (RSP11037)
- 0.300 The Gift (RSP10988)
Most genetically distant strains (All Samples)
- 0.443 Chem 91 (RSP11185)
- 0.439 Cherry Blossom (RSP11318)
- 0.421 RKM-2018-002 (RSP11093)
- 0.418 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.414 Cherry Blossom (RSP11323)
- 0.407 New York City Deisel (RSP11225)
- 0.401 Danny Noonan (RSP11070)
- 0.400 Sour D (RSP11343)
- 0.397 Lemon Skunk (RSP11229)
- 0.397 Ringo s Gift Katie s Cut (RSP11624)
- 0.395 AVIDEKEL 2 0 (RSP11174)
- 0.393 JL yellow (RSP11075)
- 0.391 Mother s Milk No 31 (RSP11623)
- 0.390 Dave Pineapple (RSP11626)
- 0.390 RKM-2018-018 (RSP11110)
- 0.389 Right Mark (RSP11628)
- 0.389 White Label 1 (RSP11336)
- 0.387 Bordello (RSP11228)
- 0.385 JL Cross 13 (RSP11514)
- 0.383 Unknown- Cherry Wine - 001 (RSP11268)
Most genetically distant strains (Base Tree)
- 0.437 RKM-2018-002 (RSP11093)
- 0.405 JL yellow (RSP11075)
- 0.402 RKM-2018-018 (RSP11110)
- 0.400 Skunk 18 (RSP11038)
- 0.384 Hermaphrodite Research Sample1 (RSP11049)
- 0.382 Sour Raspberry (RSP10551)
- 0.380 RKM-2018-009 (RSP11100)
- 0.379 Kush Hemp E1 (RSP11128)
- 0.379 RKM-2018-028 (RSP11120)
- 0.377 RKM-2018-032 (RSP11124)
- 0.376 RKM-2018-006 (RSP11097)
- 0.361 RKM-2018-005 (RSP11096)
- 0.360 RKM-2018-027 (RSP11119)
- 0.355 Cbot-2019-001 (RSP11129)
- 0.354 Skywalker OG (RSP10837)
- 0.353 Italian Kiss (RSP11034)
- 0.353 RKM-2018-023 (RSP11115)
- 0.352 RKM-2018-033 (RSP11125)
- 0.350 Cbot-2019-004 (RSP11132)
- 0.350 Blue Dream (RSP11033)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 62
- Concordance:
- 41
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- SHASUM Hash
-
183c5591fc61e4c9
3385757d240d4d71 d5cd5dde9dcb6195 cc309a05fab2a56e