IBR2
SRR 14708250
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 | c.744C>G | p.Asp248Glu | missense variant | moderate | contig676 | 168993 | C/G |
|
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1364A>G | p.Asp455Gly | missense variant | moderate | contig2621 | 340642 | A/G |
|
PHL-2 | c.1381T>G | p.Phe461Val | missense variant | moderate | contig2621 | 340659 | T/G |
|
PHL-2 | c.1450G>A | p.Glu484Lys | missense variant | moderate | contig2621 | 340728 | G/A |
|
PHL-2 | c.1493G>A | p.Gly498Asp | missense variant | moderate | contig2621 | 340771 | G/A |
|
PHL-2 | c.3020T>A | p.Ile1007Asn | missense variant | moderate | contig2621 | 343063 | T/A |
|
PKSG-4b | c.544G>T | p.Gly182Trp | missense variant | moderate | contig700 | 2721129 | C/A |
|
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.338G>A | p.Gly113Glu | missense variant | moderate | contig700 | 2721335 | C/T |
|
PKSG-4b | c.238T>C | p.Phe80Leu | missense variant | moderate | contig700 | 2724197 | A/G |
|
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
aPT1 | c.220A>G | p.Ile74Val | missense variant | moderate | contig121 | 2835927 | A/G | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.688G>A | p.Asp230Asn | missense variant | moderate | contig81 | 209650 | G/A |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1115A>G | p.Glu372Gly | missense variant | moderate | contig81 | 210077 | A/G |
|
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.1450G>C | p.Asp484His | missense variant | moderate | contig1460 | 1191948 | C/G |
|
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FT |
c.421_422dup |
p.Leu142fs | frameshift variant | high | contig1561 | 3126659 | C/CTA |
|
FT | c.424C>A | p.Leu142Ile | missense variant | moderate | contig1561 | 3126663 | C/A |
|
aPT4 | c.439T>A | p.Ser147Thr | missense variant | moderate | contig121 | 2830634 | T/A |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
AAE1-3 | c.667G>A | p.Val223Ile | missense variant | moderate | contig976 | 1083187 | C/T |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
Nearest genetic relatives (All Samples)
- 0.008 IBR3 (SRR14708249)
- 0.145 AOAC MI 542 (RSP11755)
- 0.155 AOAC MI 532 (RSP11752)
- 0.158 AOAC MI 548 (RSP11757)
- 0.158 AOAC MI 588 (RSP11760)
- 0.162 AOAC MI 567 (RSP11758)
- 0.162 Electra (RSP11366)
- 0.165 AOAC MI 569 (RSP11759)
- 0.167 Lift (RSP11378)
- 0.167 AOAC MI 501 (RSP11748)
- 0.167 AOAC MI 545 (RSP11756)
- 0.168 Tak-HN (RSP11618)
- 0.170 IBR1 (SRR14708251)
- 0.171 AOAC MI 508 (RSP11750)
- 0.172 Serious Happiness (RSP10763)
- 0.172 Doug s Varin (RSP11243)
- 0.174 AOAC MI 597 (RSP11761)
- 0.175 PCL1 (SRR14708246)
- 0.175 AOAC MI 599 (RSP11762)
- 0.181 AOAC MI 504 (RSP11749)
Nearest genetic relatives (Base Tree)
- 0.230 Liberty Haze (RSP11000)
- 0.231 KYRG-11 (RSP11051)
- 0.240 Tisza (RSP10659)
- 0.244 UP Sunrise (RSP10989)
- 0.244 Recon (RSP10755)
- 0.255 Hermaphrodite ResearchSample2 (RSP11050)
- 0.264 Golden Goat 2 (RSP10991)
- 0.266 Jiangji (RSP10653)
- 0.267 Blueberry Cheesecake (RSP10684)
- 0.271 RKM-2018-029 (RSP11121)
- 0.275 CST (RSP11002)
- 0.279 RKM-2018-031 (RSP11123)
- 0.284 Tygra (RSP10667)
- 0.288 Tisza (RSP11044)
- 0.289 Carmagnola (RSP11037)
- 0.290 RKM-2018-019 (RSP11111)
- 0.292 Monoica (RSP10241)
- 0.295 USO 31 (RSP10981)
- 0.295 RKM-2018-005 (RSP11096)
- 0.297 Blueberry Cheesecake (RSP10672)
Most genetically distant strains (All Samples)
- 0.413 JL 3rd Gen Father (RSP11196)
- 0.393 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.390 JL yellow (RSP11075)
- 0.386 Cbot-2019-005 (RSP11133)
- 0.383 The Gift (RSP10988)
- 0.380 80E (RSP11211)
- 0.378 CS (RSP11208)
- 0.377 JL 2 (RSP11076)
- 0.377 Master Kush (RSP11182)
- 0.377 Danny Noonan (RSP11070)
- 0.375 JL 3rd Gen Mother (RSP11197)
- 0.373 JL 4th Gen 1 (RSP11193)
- 0.373 Cherry Blossom (RSP11318)
- 0.372 Feral (RSP11205)
- 0.372 JL 4th Gen 2 (RSP11194)
- 0.371 Ringo s Gift Katie s Cut (RSP11624)
- 0.370 Cherry Blossom (RSP11312)
- 0.369 80E (RSP11213)
- 0.368 GG4 (RSP11978)
- 0.366 JL 4th Gen 5 (RSP11199)
Most genetically distant strains (Base Tree)
- 0.420 JL yellow (RSP11075)
- 0.396 Skunk 18 (RSP11038)
- 0.395 RKM-2018-006 (RSP11097)
- 0.392 Cbot-2019-005 (RSP11133)
- 0.372 Kush Hemp E1 (RSP11128)
- 0.366 RKM-2018-002 (RSP11093)
- 0.365 RKM-2018-028 (RSP11120)
- 0.361 RKM-2018-027 (RSP11119)
- 0.361 Cbot-2019-004 (RSP11132)
- 0.359 RKM-2018-009 (RSP11100)
- 0.354 Hermaphrodite Research Sample1 (RSP11049)
- 0.350 Italian Kiss (RSP11034)
- 0.348 RKM-2018-018 (RSP11110)
- 0.347 The Gift (RSP10988)
- 0.339 RKM-2018-023 (RSP11115)
- 0.339 Black Beauty (RSP11035)
- 0.339 Skywalker OG (RSP10837)
- 0.338 Cherry (RSP11143)
- 0.338 Fedora 17 (RSP10661)
- 0.337 Carmagnola (RSP10979)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 16
- Concordance:
- 12