JL 3rd Gen Mother

RSP11197
StrainSEEK Cannabis Certification Report

Accession Date:

June 27, 2019

General Information

Strain: JL 3rd Gen Mother
RSP ID: RSP11197
Grower: Medicinal Genomics
Accession Date: June 27, 2019
Gender: -
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.68
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type II

Bt/Bd ALLELE COVERAGE

What does this visualization mean?

CBCAS COVERAGE


What does this visualization mean?


VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001944616

IGV:Start|Jump

C/T

NGS:0.123

C90:0.000

0.123
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
PKSG-4b

UNIPROT

c.323A>Gp.Glu108Glymissense variantMODERATEcontig7002721350

IGV:Start|Jump

T/C

NGS:0.469

C90:0.000

0.469
PKSG-4b

UNIPROT

c.316+2T>Asplice donor variant&intron variantHIGHcontig7002723818

IGV:Start|Jump

A/T

NGS:0.070

C90:0.689

0.07
PKSG-4b

UNIPROT

c.229G>Ap.Gly77Sermissense variantMODERATEcontig7002724206

IGV:Start|Jump

C/T

NGS:0.042

C90:0.000

0.042
PKSG-4b

UNIPROT

c.216G>Cp.Leu72Phemissense variantMODERATEcontig7002724219

IGV:Start|Jump

C/G

NGS:0.044

C90:0.000

0.044
PKSG-4b

UNIPROT

c.206T>Cp.Leu69Sermissense variantMODERATEcontig7002724229

IGV:Start|Jump

A/G

NGS:0.044

C90:0.000

0.044
FAD2-2

UNIPROT

c.190C>Tp.His64Tyrmissense variantMODERATEcontig831803179

IGV:Start|Jump

G/A

NGS:0.013

C90:0.000

0.013
FAD2-2

UNIPROT

c.161T>Ap.Leu54Hismissense variantMODERATEcontig831803208

IGV:Start|Jump

A/T

NGS:0.156

C90:0.000

0.156
FAD2-2

UNIPROT

c.154G>Ap.Val52Ilemissense variantMODERATEcontig831803215

IGV:Start|Jump

C/T

NGS:0.022

C90:0.000

0.022
AAE1-2

UNIPROT

c.331A>Gp.Asn111Aspmissense variantMODERATEcontig81209293

IGV:Start|Jump

A/G

NGS:0.123

C90:0.000

0.123
AAE1-2

UNIPROT

c.948_949insAp.Asp317fsframeshift variantHIGHcontig81209910

IGV:Start|Jump

C/CA

NGS:0.050

C90:0.000

0.05
AAE1-2

UNIPROT

c.952delCp.Gln318fsframeshift variantHIGHcontig81209912

IGV:Start|Jump

AC/A

NGS:0.050

C90:0.000

0.05
AAE1-2

UNIPROT

c.953A>Gp.Gln318Argmissense variantMODERATEcontig81209915

IGV:Start|Jump

A/G

NGS:0.050

C90:0.000

0.05
AAE1-2

UNIPROT

c.955C>Tp.Arg319Cysmissense variantMODERATEcontig81209917

IGV:Start|Jump

C/T

NGS:0.050

C90:0.000

0.05
AAE1-2

UNIPROT

c.1006A>Gp.Lys336Glumissense variantMODERATEcontig81209968

IGV:Start|Jump

A/G

NGS:0.116

C90:0.000

0.116
PHL-1

UNIPROT

c.2651C>Tp.Ala884Valmissense variantMODERATEcontig14391487146

IGV:Start|Jump

G/A

NGS:0.044

C90:0.622

0.044
PHL-1

UNIPROT

c.2623A>Gp.Thr875Alamissense variantMODERATEcontig14391487174

IGV:Start|Jump

T/C

NGS:0.123

C90:0.000

0.123
PHL-1

UNIPROT

c.2561A>Tp.Asn854Ilemissense variantMODERATEcontig14391487236

IGV:Start|Jump

T/A

NGS:0.046

C90:0.612

0.046
PHL-1

UNIPROT

c.2551A>Gp.Thr851Alamissense variantMODERATEcontig14391487246

IGV:Start|Jump

T/C

NGS:0.116

C90:0.890

0.116
PHL-1

UNIPROT

c.1387A>Gp.Thr463Alamissense variantMODERATEcontig14391489811

IGV:Start|Jump

T/C

NGS:0.107

C90:0.904

0.107
TFL1

UNIPROT

c.302-1G>Asplice acceptor variant&intron variantHIGHcontig1636520616

IGV:Start|Jump

C/T

NGS:0.103

C90:0.794

0.103
TFL1

UNIPROT

c.47_48dupATp.Val17fsframeshift variantHIGHcontig1636521258

IGV:Start|Jump

C/CAT

NGS:0.026

C90:0.211

0.026
HDS-1

UNIPROT

c.1378G>Ap.Val460Ilemissense variantMODERATEcontig1891886370

IGV:Start|Jump

C/T

NGS:0.167

C90:0.000

0.167
HDS-1

UNIPROT

c.136G>Ap.Val46Ilemissense variantMODERATEcontig1891889256

IGV:Start|Jump

C/T

NGS:0.088

C90:0.593

0.088
HDS-1

UNIPROT

c.56C>Gp.Ala19Glymissense variantMODERATEcontig1891889336

IGV:Start|Jump

G/C

NGS:0.125

C90:0.943

0.125
HDS-1

UNIPROT

c.35G>Ap.Cys12Tyrmissense variantMODERATEcontig1891889357

IGV:Start|Jump

C/T

NGS:0.094

C90:0.646

0.094
HDS-1

UNIPROT

c.-108+1_-108+2insGsplice donor variant&intron variantHIGHcontig1891889975

IGV:Start|Jump

A/AC

NGS:0.217

C90:0.000

0.217
FT

UNIPROT

c.32_43dupATAATAATAATAp.Asn11_Asn14dupdisruptive inframe insertionMODERATEcontig15613124441

IGV:Start|Jump

T/TTAATAATAATAA

NGS:0.066

C90:0.000

0.066
AAE1-3

UNIPROT

c.667G>Ap.Val223Ilemissense variantMODERATEcontig9761083187

IGV:Start|Jump

C/T

NGS:0.048

C90:0.000

0.048
AAE1-3

UNIPROT

c.634G>Cp.Gly212Argmissense variantMODERATEcontig9761083220

IGV:Start|Jump

C/G

NGS:0.116

C90:0.000

0.116
AAE1-3

UNIPROT

c.475G>Ap.Gly159Argmissense variantMODERATEcontig9761083550

IGV:Start|Jump

C/T

NGS:0.048

C90:0.000

0.048
AAE1-3

UNIPROT

c.416T>Cp.Leu139Promissense variantMODERATEcontig9761083609

IGV:Start|Jump

A/G

NGS:0.061

C90:0.000

0.061
AAE1-3

UNIPROT

c.382T>Cp.Tyr128Hismissense variantMODERATEcontig9761083643

IGV:Start|Jump

A/G

NGS:0.072

C90:0.000

0.072
AAE1-3

UNIPROT

c.296C>Tp.Pro99Leumissense variantMODERATEcontig9761083729

IGV:Start|Jump

G/A

NGS:0.046

C90:0.000

0.046
AAE1-3

UNIPROT

c.293A>Gp.Asp98Glymissense variantMODERATEcontig9761083732

IGV:Start|Jump

T/C

NGS:0.068

C90:0.000

0.068
AAE1-3

UNIPROT

c.284A>Tp.Glu95Valmissense variantMODERATEcontig9761083741

IGV:Start|Jump

T/A

NGS:0.053

C90:0.000

0.053
AAE1-3

UNIPROT

c.181G>Ap.Val61Ilemissense variantMODERATEcontig9761083894

IGV:Start|Jump

C/T

NGS:0.055

C90:0.000

0.055
AAE1-3

UNIPROT

c.167A>Gp.Glu56Glymissense variantMODERATEcontig9761083908

IGV:Start|Jump

T/C

NGS:0.070

C90:0.000

0.07
AAE1-3

UNIPROT

c.125A>Gp.Glu42Glymissense variantMODERATEcontig9761083950

IGV:Start|Jump

T/C

NGS:0.064

C90:0.000

0.064
AAE1-3

UNIPROT

c.79A>Gp.Thr27Alamissense variantMODERATEcontig9761083996

IGV:Start|Jump

T/C

NGS:0.068

C90:0.000

0.068
AAE1-3

UNIPROT

c.52G>Ap.Gly18Sermissense variantMODERATEcontig9761084023

IGV:Start|Jump

C/T

NGS:0.064

C90:0.000

0.064
AAE1-3

UNIPROT

c.3G>Ap.Met1?start lostHIGHcontig9761084072

IGV:Start|Jump

C/T

NGS:0.046

C90:0.416

0.046
GGR

UNIPROT

c.317C>Tp.Pro106Leumissense variantMODERATEcontig2282549309

IGV:Start|Jump

C/T

NGS:0.035

C90:0.220

0.035
GGR

UNIPROT

c.456T>Ap.His152Glnmissense variantMODERATEcontig2282549448

IGV:Start|Jump

T/A

NGS:0.068

C90:0.000

0.068
GGR

UNIPROT

c.460G>Ap.Asp154Asnmissense variantMODERATEcontig2282549452

IGV:Start|Jump

G/A

NGS:0.070

C90:0.000

0.07
GGR

UNIPROT

c.704A>Tp.His235Leumissense variantMODERATEcontig2282549696

IGV:Start|Jump

A/T

NGS:0.121

C90:0.000

0.121
GGR

UNIPROT

c.810A>Tp.Glu270Aspmissense variantMODERATEcontig2282549802

IGV:Start|Jump

A/T

NGS:0.024

C90:0.000

0.024


NEAREST GENETIC RELATIVES TO JL 3rd Gen Mother:
# Relative Genetic Distance
1 RSP11075-JL yellow 0
2 RSP11214-JL 3rd Gen Mother 0.03
3 RSP11193-JL 4th Gen 1 4.23
4 RSP11195-JL 4th Gen 3 4.79
5 RSP11200-JL 4th Gen 6 5.1
6 RSP11194-JL 4th Gen 2 5.27
7 RSP11199-JL 4th Gen 5 5.29
8 RSP11198-JL 4th Gen 4 5.35
9 RSP11127-Jamaican Lions Ancestor 5.62
10 RSP11153-JL 4th Gen 7 6.08
11 RSP11342-Blue Dream 7.61
12 RSP11005-Blue Dream 8.13
13 RSP11032-Blue Dream 8.16
14 RSP11031-Snoops Dream 8.22
15 RSP11003-Snoops Dream 8.29
16 RSP11012-Blue Dream 8.29
17 RSP11227-Blue Dream 8.34
18 RSP11033-Blue Dream 8.35
19 RSP11009-Blue Dream 8.39
20 RSP10990-Italian Kiss 8.4
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11075-JL yellow 0.02
2 RSP11033-Blue Dream 7.9
3 RSP11002-CST 8.13
4 RSP11034-Italian Kiss 8.47
5 RSP11097-RKM-2018-006 8.56
6 RSP11115-RKM-2018-023 8.69
7 RSP10680-Blueberry Cheesecake 8.9
8 RSP11119-RKM-2018-027 8.98
9 RSP10551-Sour Raspberry 8.99
10 RSP11100-RKM-2018-009 9.01
11 RSP10997-Kimbo Slice 9.03
12 RSP10105-QUEEN JESUS 9.16
13 RSP11050-Hermaphrodite ResearchSample2 9.17
14 RSP10989-UP Sunrise 9.28
15 RSP11014-Durban Poison 9.31
16 RSP10653-Jiangji 9.37
17 RSP11000-Liberty Haze 9.48
18 RSP11038-Skunk 18 9.49
19 RSP11048-Gold Cracker 9.49
20 RSP11035-Black Beauty 9.56
MOST GENETICALLY DISTANT STRAINS FROM JL 3rd Gen Mother:
# Strain Genetic Distance
1 RSP11333-Cherry Blossom 14.72
2 RSP11308-Cherry Blossom 14.66
3 RSP11211-80E 14.61
4 RSP11335-Cherry Blossom 14.58
5 RSP11213-80E 14.51
6 RSP11311-Cherry Blossom 14.27
7 RSP11317-Cherry Blossom 14.22
8 RSP11212-80E 14.13
9 RSP11324-Cherry Blossom 13.98
10 RSP11314-Cherry Blossom 13.79
11 RSP11190-Red Eye OG 13.7
12 RSP11205-Feral 13.69
13 RSP11329-Cherry Blossom 13.57
14 RSP11300-Cherry Blossom 13.55
15 RSP11133-Cbot-2019-005 13.53
16 RSP11302-Cherry Blossom 13.48
17 RSP11334-Cherry Blossom 13.43
18 RSP11206-Feral 13.39
19 RSP11328-Cherry Blossom 13.38
20 RSP11312-Cherry Blossom 13.37
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8346904 76 49
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495249 9 7

Blockchain Registration Information:

Transaction ID: 1f200418be06a31c03079261e50d332f7fa9e2860d7a034a6ed7df73cf83c828
Stamping Certificate: PDF
SHASUM Hash: 43e00497c9035c51c185a63bd06df2d3beef0f37495dc3b2fb04e31869c41ed8