JL 4th Gen 1
RSP 11193
Grower: Medicinal Genomics
General Information
- Accession Date
- June 26, 2019
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSA-3b | c.298G>A | p.Ala100Thr | missense variant | moderate | contig705 | 2271640 | C/T | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1540A>G | p.Thr514Ala | missense variant | moderate | contig2621 | 340818 | A/G | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3202A>C | p.Thr1068Pro | missense variant | moderate | contig2621 | 343245 | A/C |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PKSG-2a | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1944616 | C/T |
|
PKSG-2a | c.718T>A | p.Phe240Ile | missense variant | moderate | contig700 | 1944672 | A/T |
|
PKSG-2a | c.560C>T | p.Thr187Met | missense variant | moderate | contig700 | 1944830 | G/A |
|
PKSG-2a | c.558G>A | p.Met186Ile | missense variant | moderate | contig700 | 1944832 | C/T |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.718T>A | p.Phe240Ile | missense variant | moderate | contig700 | 1950920 | A/T |
|
PKSG-2b | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1951408 | A/G | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.544G>T | p.Gly182Trp | missense variant | moderate | contig700 | 2721129 | C/A |
|
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.338G>A | p.Gly113Glu | missense variant | moderate | contig700 | 2721335 | C/T |
|
PKSG-4b |
c.235_239dup |
p.Phe80fs | frameshift variant | high | contig700 | 2724195 | G/GAATCT |
|
PKSG-4b | c.134G>A | p.Arg45Gln | missense variant | moderate | contig700 | 2724301 | C/T |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
OAC-2 | c.22G>A | p.Val8Ile | missense variant | moderate | contig931 | 110317 | C/T |
|
OAC-1 | c.185C>T | p.Thr62Ile | missense variant | moderate | contig931 | 118179 | G/A |
|
OAC-1 | c.175G>A | p.Val59Ile | missense variant | moderate | contig931 | 118189 | C/T |
|
FAD2-2 | c.164A>G | p.His55Arg | missense variant | moderate | contig83 | 1803205 | T/C |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.64G>T | p.Ala22Ser | missense variant | moderate | contig83 | 1803305 | C/A |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.752G>T | p.Gly251Val | missense variant | moderate | contig97 | 242458 | G/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
PHL-1 | c.2651C>T | p.Ala884Val | missense variant | moderate | contig1439 | 1487146 | G/A | |
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2561A>T | p.Asn854Ile | missense variant | moderate | contig1439 | 1487236 | T/A | |
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
TFL1 | c.47_48dupAT | p.Val17fs | frameshift variant | high | contig1636 | 521258 | C/CAT | |
FAD4 | c.121G>T | p.Val41Phe | missense variant | moderate | contig784 | 1690873 | G/T |
|
FAD4 | c.220C>G | p.Arg74Gly | missense variant | moderate | contig784 | 1690972 | C/G |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
FT |
c.32_43dupAT |
p.Asn11_Asn1 |
disruptive inframe insertion | moderate | contig1561 | 3124441 |
T/TTAATAATAA |
|
FT |
c.23_43dupAT |
p.Asn8_Asn14 |
disruptive inframe insertion | moderate | contig1561 | 3124441 |
T/TTAATAATAA |
|
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
AAE1-3 | c.722G>A | p.Arg241Lys | missense variant | moderate | contig976 | 1083132 | C/T |
|
AAE1-3 | c.667G>A | p.Val223Ile | missense variant | moderate | contig976 | 1083187 | C/T |
|
AAE1-3 | c.659G>A | p.Arg220Gln | missense variant | moderate | contig976 | 1083195 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.475G>A | p.Gly159Arg | missense variant | moderate | contig976 | 1083550 | C/T |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.296C>T | p.Pro99Leu | missense variant | moderate | contig976 | 1083729 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
|
AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.3G>A | p.Met1? | start lost | high | contig976 | 1084072 | C/T | |
FAD7A-1 |
c.*340_*343- |
splice donor variant & splice region variant & 3 prime UTR variant & intron variant | high | contig510 | 71467 |
CTATATATATAT |
|
|
GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
GGR | c.810A>T | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.097 JL 4th Gen 3 (RSP11195)
- 0.104 JL 4th Gen 6 (RSP11200)
- 0.117 JL 4th Gen 4 (RSP11198)
- 0.119 JL 4th Gen 2 (RSP11194)
- 0.131 JL 3rd Gen Mother (RSP11214)
- 0.138 JL yellow (RSP11075)
- 0.141 JL 3rd Gen Mother (RSP11197)
- 0.149 Jamaican Lions Ancestor (RSP11127)
- 0.155 JL 4th Gen 5 (RSP11199)
- 0.170 JL 4th Gen 7 (RSP11153)
- 0.176 JL 3rd Gen Father (RSP11196)
- 0.275 CST (RSP11002)
- 0.275 Super Blue Dream (RSP11011)
- 0.276 Blue Dream (RSP11342)
- 0.279 Italian Kiss (RSP10990)
- 0.281 Blue Dream (RSP11012)
- 0.282 Blue Dream (RSP11005)
- 0.283 RKM-2018-023 (RSP11115)
- 0.285 Blue Dream (RSP11006)
- 0.286 Blue Dream (RSP11032)
Nearest genetic relatives (Base Tree)
- 0.143 JL yellow (RSP11075)
- 0.270 CST (RSP11002)
- 0.276 RKM-2018-023 (RSP11115)
- 0.284 Blue Dream (RSP11033)
- 0.287 Skunk 18 (RSP11038)
- 0.290 Italian Kiss (RSP11034)
- 0.292 RKM-2018-027 (RSP11119)
- 0.297 RKM-2018-006 (RSP11097)
- 0.297 Gold Cracker (RSP11048)
- 0.299 RKM-2018-003 (RSP11094)
- 0.301 Blueberry Cheesecake (RSP10680)
- 0.302 Golden Goat 2 (RSP10991)
- 0.310 Blueberry Cheesecake (RSP10684)
- 0.310 RKM-2018-020 (RSP11112)
- 0.312 Sour Raspberry (RSP10551)
- 0.315 RKM-2018-031 (RSP11123)
- 0.315 Liberty Haze (RSP11000)
- 0.315 Hermaphrodite ResearchSample2 (RSP11050)
- 0.316 UP Sunrise (RSP10989)
- 0.318 QUEEN JESUS (RSP10105)
Most genetically distant strains (All Samples)
- 0.480 Cherry Blossom (RSP11318)
- 0.465 Cherry Blossom (RSP11335)
- 0.463 Cherry Blossom (RSP11308)
- 0.458 Cherry Blossom (RSP11317)
- 0.455 Cherry Blossom (RSP11311)
- 0.454 Cherry Blossom (RSP11333)
- 0.453 Cherry Blossom (RSP11323)
- 0.448 Cherry Blossom (RSP11306)
- 0.440 Cherry Blossom (RSP11300)
- 0.439 Cherry Blossom (RSP11328)
- 0.435 Cherry Blossom (RSP11326)
- 0.433 Cherry Blossom (RSP11334)
- 0.433 80E (RSP11213)
- 0.432 Cherry Blossom (RSP11330)
- 0.432 Cherry Blossom (RSP11322)
- 0.431 Cherry Blossom (RSP11304)
- 0.430 Cherry Blossom (RSP11329)
- 0.429 Cherry Blossom (RSP11302)
- 0.428 Cherry Blossom (RSP11298)
- 0.428 Cherry Blossom (RSP11301)
Most genetically distant strains (Base Tree)
- 0.402 Kush Hemp E1 (RSP11128)
- 0.400 Cherry (RSP11142)
- 0.389 Cbot-2019-005 (RSP11133)
- 0.388 Cherry (RSP11143)
- 0.385 Skywalker OG (RSP10837)
- 0.383 RKM-2018-002 (RSP11093)
- 0.377 Cbot-2019-001 (RSP11129)
- 0.376 Santhica27 (RSP11047)
- 0.371 USO 31 (RSP10981)
- 0.370 Feral (RSP10890)
- 0.370 Carmagnola (RSP11037)
- 0.363 RKM-2018-026 (RSP11118)
- 0.362 RKM-2018-028 (RSP11120)
- 0.361 RKM-2018-018 (RSP11110)
- 0.360 Tisza (RSP10659)
- 0.360 RKM-2018-022 (RSP11114)
- 0.360 Futura 75 (RSP10664)
- 0.359 Hermaphrodite Research Sample1 (RSP11049)
- 0.357 Monoica (RSP10241)
- 0.356 RKM-2018-032 (RSP11124)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 100
- Concordance:
- 62
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 10
- Concordance:
- 7
Blockchain Registration Information
- Transaction ID
-
f590df7d905c1ca6
123209fe211daef0 05424188b572a2af 73b026b1f7146808 - Stamping Certificate
- Download PDF (844.7 KB)
- SHASUM Hash
-
6f1633ee977f9c1f
4d0eecd955528332 ce4fb7b9a5db8ef9 f9c359a398145adb