CS

RSP11208
StrainSEEK Cannabis Certification Report

Accession Date:

June 27, 2019

General Information

Strain: CS
Sample: CS_1_2016_CSU
RSP ID: RSP11208
Grower: John McKay-Colorado State University
Accession Date: June 27, 2019
Gender: -
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 2.08
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type III

Bt/Bd ALLELE COVERAGE

What does this visualization mean?


VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSA-3b

UNIPROT

c.298G>Ap.Ala100Thrmissense variantMODERATEcontig7052271640

IGV:Start|Jump

C/T

NGS:0.044

C90:0.177

0.044
GPPs1

UNIPROT

c.845_848delAAAGp.Glu282fsframeshift variantHIGHcontig676169629

IGV:Start|Jump

TGAAA/T

NGS:0.118

C90:0.000

0.118
GPPs1

UNIPROT

c.896A>Gp.Asn299Sermissense variantMODERATEcontig676169772

IGV:Start|Jump

A/G

NGS:0.046

C90:0.000

0.046
EMF1-2

UNIPROT

c.710A>Cp.His237Promissense variantMODERATEcontig885810

IGV:Start|Jump

A/C

NGS:0.090

C90:0.474

0.09
EMF1-2

UNIPROT

c.1187T>Cp.Leu396Sermissense variantMODERATEcontig8852073

IGV:Start|Jump

T/C

NGS:0.026

C90:0.000

0.026
EMF1-2

UNIPROT

c.2256A>Tp.Lys752Asnmissense variantMODERATEcontig8853142

IGV:Start|Jump

A/T

NGS:0.026

C90:0.000

0.026
PHL-2

UNIPROT

c.44G>Ap.Arg15Lysmissense variantMODERATEcontig2621337613

IGV:Start|Jump

G/A

NGS:0.015

C90:0.167

0.015
PHL-2

UNIPROT

c.932T>Cp.Leu311Promissense variantMODERATEcontig2621340210

IGV:Start|Jump

T/C

NGS:0.039

C90:0.268

0.039
PHL-2

UNIPROT

c.1057A>Gp.Arg353Glymissense variantMODERATEcontig2621340335

IGV:Start|Jump

A/G

NGS:0.096

C90:0.555

0.096
PHL-2

UNIPROT

c.1096G>Ap.Ala366Thrmissense variantMODERATEcontig2621340374

IGV:Start|Jump

G/A

NGS:0.090

C90:0.531

0.09
PHL-2

UNIPROT

c.2564T>Ap.Phe855Tyrmissense variantMODERATEcontig2621342607

IGV:Start|Jump

T/A

NGS:0.064

C90:0.732

0.064
PHL-2

UNIPROT

c.2578T>Ap.Leu860Ilemissense variantMODERATEcontig2621342621

IGV:Start|Jump

T/A

NGS:0.068

C90:0.746

0.068
PHL-2

UNIPROT

c.2624C>Tp.Ser875Phemissense variantMODERATEcontig2621342667

IGV:Start|Jump

C/T

NGS:0.042

C90:0.268

0.042
PHL-2

UNIPROT

c.2783G>Ap.Ser928Asnmissense variantMODERATEcontig2621342826

IGV:Start|Jump

G/A

NGS:0.107

C90:0.890

0.107
PHL-2

UNIPROT

c.2830A>Cp.Asn944Hismissense variantMODERATEcontig2621342873

IGV:Start|Jump

A/C

NGS:0.044

C90:0.000

0.044
PHL-2

UNIPROT

c.2933G>Tp.Arg978Leumissense variantMODERATEcontig2621342976

IGV:Start|Jump

G/T

NGS:0.048

C90:0.297

0.048
PHL-2

UNIPROT

c.2936T>Gp.Val979Glymissense variantMODERATEcontig2621342979

IGV:Start|Jump

T/G

NGS:0.048

C90:0.000

0.048
PHL-2

UNIPROT

c.3209A>Gp.Gln1070Argmissense variantMODERATEcontig2621343252

IGV:Start|Jump

A/G

NGS:0.103

C90:0.885

0.103
PHL-2

UNIPROT

c.3467A>Gp.Gln1156Argmissense variantMODERATEcontig2621343510

IGV:Start|Jump

A/G

NGS:0.064

C90:0.713

0.064
PKSG-4a

UNIPROT

c.37C>Gp.Gln13Glumissense variantMODERATEcontig7001936734

IGV:Start|Jump

C/G

NGS:0.031

C90:0.000

0.031
PKSG-4a

UNIPROT

c.617A>Gp.Tyr206Cysmissense variantMODERATEcontig7001938028

IGV:Start|Jump

A/G

NGS:0.075

C90:0.000

0.075
PKSG-4a

UNIPROT

c.626_628delATAp.Asn209deldisruptive inframe deletionMODERATEcontig7001938032

IGV:Start|Jump

CAAT/C

NGS:0.075

C90:0.000

0.075
PKSG-4a

UNIPROT

c.1191_1193delTTAp.Tyr398deldisruptive inframe deletionMODERATEcontig7001938600

IGV:Start|Jump

AATT/A

NGS:0.167

C90:0.000

0.167
PKSG-2a

UNIPROT

c.1136G>Ap.Arg379Hismissense variantMODERATEcontig7001944254

IGV:Start|Jump

C/T

NGS:0.020

C90:0.000

0.02
PKSG-2a

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001944273

IGV:Start|Jump

T/C

NGS:0.101

C90:0.967

0.101
PKSG-2a

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001944442

IGV:Start|Jump

A/C

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001944445

IGV:Start|Jump

A/C

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001944446

IGV:Start|Jump

C/T

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001944456

IGV:Start|Jump

G/C

NGS:0.070

C90:0.000

0.07
PKSG-2a

UNIPROT

c.162C>Ap.Asp54Glumissense variantMODERATEcontig7001945228

IGV:Start|Jump

G/T

NGS:0.011

C90:0.000

0.011
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.67A>Tp.Ile23Phemissense variantMODERATEcontig7001951815

IGV:Start|Jump

T/A

NGS:0.033

C90:0.325

0.033
PKSG-4b

UNIPROT

c.558-1G>Asplice acceptor variant&intron variantHIGHcontig7002715037

IGV:Start|Jump

C/T

NGS:0.009

C90:0.000

0.009
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.353_354insCCp.Gly119fsframeshift variantHIGHcontig7002721319

IGV:Start|Jump

T/TGG

NGS:0.175

C90:0.000

0.175
PKSG-4b

UNIPROT

c.324A>Cp.Glu108Aspmissense variantMODERATEcontig7002721349

IGV:Start|Jump

T/G

NGS:0.094

C90:0.000

0.094
PKSG-4b

UNIPROT

c.323A>Gp.Glu108Glymissense variantMODERATEcontig7002721350

IGV:Start|Jump

T/C

NGS:0.469

C90:0.000

0.469
PKSG-4b

UNIPROT

c.316+2T>Asplice donor variant&intron variantHIGHcontig7002723818

IGV:Start|Jump

A/T

NGS:0.070

C90:0.689

0.07
PKSG-4b

UNIPROT

c.238T>Cp.Phe80Leumissense variantMODERATEcontig7002724197

IGV:Start|Jump

A/G

NGS:0.013

C90:0.000

0.013
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
DXR-2

UNIPROT

c.1140A>Tp.Lys380Asnmissense variantMODERATEcontig380285582

IGV:Start|Jump

T/A

NGS:0.002

C90:0.000

0.002
DXR-2

UNIPROT

c.431C>Gp.Ala144Glymissense variantMODERATEcontig380287760

IGV:Start|Jump

G/C

NGS:0.182

C90:0.550

0.182
OAC-2

UNIPROT

c.260C>Gp.Ser87Cysmissense variantMODERATEcontig931109979

IGV:Start|Jump

G/C

NGS:0.070

C90:0.000

0.07
OAC-2

UNIPROT

c.185C>Tp.Thr62Ilemissense variantMODERATEcontig931110054

IGV:Start|Jump

G/A

NGS:0.029

C90:0.000

0.029
OAC-1

UNIPROT

c.260C>Gp.Ser87Cysmissense variantMODERATEcontig931118104

IGV:Start|Jump

G/C

NGS:0.053

C90:0.000

0.053
OAC-1

UNIPROT

c.220A>Gp.Ile74Valmissense variantMODERATEcontig931118144

IGV:Start|Jump

T/C

NGS:0.033

C90:0.670

0.033
OAC-1

UNIPROT

c.185C>Tp.Thr62Ilemissense variantMODERATEcontig931118179

IGV:Start|Jump

G/A

NGS:0.039

C90:0.000

0.039
OAC-1

UNIPROT

c.175G>Ap.Val59Ilemissense variantMODERATEcontig931118189

IGV:Start|Jump

C/T

NGS:0.026

C90:0.000

0.026
FAD2-2

UNIPROT

c.110C>Tp.Ala37Valmissense variantMODERATEcontig831803259

IGV:Start|Jump

G/A

NGS:0.013

C90:0.000

0.013
ELF3

UNIPROT

c.358G>Ap.Gly120Argmissense variantMODERATEcontig97242064

IGV:Start|Jump

G/A

NGS:0.099

C90:0.493

0.099
ELF3

UNIPROT

c.520A>Cp.Asn174Hismissense variantMODERATEcontig97242226

IGV:Start|Jump

A/C

NGS:0.094

C90:0.502

0.094
ELF3

UNIPROT

c.574A>Gp.Asn192Aspmissense variantMODERATEcontig97242280

IGV:Start|Jump

A/G

NGS:0.042

C90:0.579

0.042
ELF3

UNIPROT

c.757C>Tp.Pro253Sermissense variantMODERATEcontig97242463

IGV:Start|Jump

C/T

NGS:0.020

C90:0.048

0.02
ELF3

UNIPROT

c.772A>Gp.Ser258Glymissense variantMODERATEcontig97242478

IGV:Start|Jump

A/G

NGS:0.112

C90:0.000

0.112
ELF3

UNIPROT

c.812G>Cp.Gly271Alamissense variantMODERATEcontig97242518

IGV:Start|Jump

G/C

NGS:0.114

C90:0.938

0.114
ELF3

UNIPROT

c.1229+2T>Csplice donor variant&intron variantHIGHcontig97243389

IGV:Start|Jump

T/C

NGS:0.011

C90:0.000

0.011
ELF3

UNIPROT

c.1466G>Ap.Ser489Asnmissense variantMODERATEcontig97244297

IGV:Start|Jump

G/A

NGS:0.123

C90:0.000

0.123
ELF3

UNIPROT

c.1832A>Gp.Tyr611Cysmissense variantMODERATEcontig97244663

IGV:Start|Jump

A/G

NGS:0.004

C90:0.000

0.004
ELF3

UNIPROT

c.1966C>Gp.Pro656Alamissense variantMODERATEcontig97244797

IGV:Start|Jump

C/G

NGS:0.123

C90:0.632

0.123
ELF3

UNIPROT

c.2128C>Gp.His710Aspmissense variantMODERATEcontig97244959

IGV:Start|Jump

C/G

NGS:0.004

C90:0.000

0.004
ELF3

UNIPROT

c.2140C>Tp.Pro714Sermissense variantMODERATEcontig97244971

IGV:Start|Jump

C/T

NGS:0.018

C90:0.038

0.018
ELF3

UNIPROT

c.2141C>Gp.Pro714Argmissense variantMODERATEcontig97244972

IGV:Start|Jump

C/G

NGS:0.088

C90:0.335

0.088
ELF3

UNIPROT

c.2198G>Tp.Arg733Leumissense variantMODERATEcontig97245029

IGV:Start|Jump

G/T

NGS:0.125

C90:0.531

0.125
aPT4

UNIPROT

c.97T>Cp.Tyr33Hismissense variantMODERATEcontig1212828753

IGV:Start|Jump

T/C

NGS:0.439

C90:0.000

0.439
aPT4

UNIPROT

c.153A>Cp.Lys51Asnmissense variantMODERATEcontig1212828809

IGV:Start|Jump

A/C

NGS:0.375

C90:0.000

0.375
aPT4

UNIPROT

c.198A>Cp.Lys66Asnmissense variantMODERATEcontig1212828854

IGV:Start|Jump

A/C

NGS:0.044

C90:0.000

0.044
aPT4

UNIPROT

c.235_236delGTp.Val79fsframeshift variantHIGHcontig1212829030

IGV:Start|Jump

ATG/A

NGS:0.417

C90:0.000

0.417
aPT4

UNIPROT

c.238delTp.Ser80fsframeshift variantHIGHcontig1212829034

IGV:Start|Jump

AT/A

NGS:0.421

C90:0.000

0.421
aPT1

UNIPROT

c.95_97delGTTp.Cys32deldisruptive inframe deletionMODERATEcontig1212835800

IGV:Start|Jump

ATGT/A

NGS:0.118

C90:0.311

0.118
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721
AAE1-2

UNIPROT

c.331A>Gp.Asn111Aspmissense variantMODERATEcontig81209293

IGV:Start|Jump

A/G

NGS:0.123

C90:0.000

0.123
AAE1-2

UNIPROT

c.409C>Tp.Arg137Cysmissense variantMODERATEcontig81209371

IGV:Start|Jump

C/T

NGS:0.009

C90:0.000

0.009
AAE1-2

UNIPROT

c.1006A>Gp.Lys336Glumissense variantMODERATEcontig81209968

IGV:Start|Jump

A/G

NGS:0.116

C90:0.000

0.116
AAE1-2

UNIPROT

c.1102C>Ap.His368Asnmissense variantMODERATEcontig81210064

IGV:Start|Jump

C/A

NGS:0.033

C90:0.000

0.033
AAE1-2

UNIPROT

c.1118C>Gp.Thr373Sermissense variantMODERATEcontig81210080

IGV:Start|Jump

C/G

NGS:0.026

C90:0.000

0.026
AAE1-2

UNIPROT

c.1177G>Ap.Asp393Asnmissense variantMODERATEcontig81210139

IGV:Start|Jump

G/A

NGS:0.013

C90:0.000

0.013
AAE1-2

UNIPROT

c.1415G>Ap.Ser472Asnmissense variantMODERATEcontig81210377

IGV:Start|Jump

G/A

NGS:0.070

C90:0.000

0.07
AAE1-2

UNIPROT

c.1417A>Gp.Thr473Alamissense variantMODERATEcontig81210379

IGV:Start|Jump

A/G

NGS:0.070

C90:0.000

0.07
AAE1-2

UNIPROT

c.1424G>Ap.Ser475Asnmissense variantMODERATEcontig81210386

IGV:Start|Jump

G/A

NGS:0.007

C90:0.000

0.007
AAE1-2

UNIPROT

c.1434G>Tp.Glu478Aspmissense variantMODERATEcontig81210396

IGV:Start|Jump

G/T

NGS:0.075

C90:0.000

0.075
AAE1-2

UNIPROT

c.1541T>Cp.Val514Alamissense variantMODERATEcontig81210503

IGV:Start|Jump

T/C

NGS:0.050

C90:0.000

0.05
PHL-1

UNIPROT

c.2623A>Gp.Thr875Alamissense variantMODERATEcontig14391487174

IGV:Start|Jump

T/C

NGS:0.123

C90:0.000

0.123
PHL-1

UNIPROT

c.2551A>Gp.Thr851Alamissense variantMODERATEcontig14391487246

IGV:Start|Jump

T/C

NGS:0.116

C90:0.890

0.116
PHL-1

UNIPROT

c.1387A>Gp.Thr463Alamissense variantMODERATEcontig14391489811

IGV:Start|Jump

T/C

NGS:0.107

C90:0.904

0.107
Edestin

UNIPROT

c.224A>Gp.Glu75Glymissense variantMODERATEcontig8503065066

IGV:Start|Jump

T/C

NGS:0.002

C90:0.000

0.002
Edestin

UNIPROT

c.202G>Ap.Gly68Argmissense variantMODERATEcontig8503065088

IGV:Start|Jump

C/T

NGS:0.002

C90:0.000

0.002
Edestin

UNIPROT

c.40G>Ap.Ala14Thrmissense variantMODERATEcontig8503065250

IGV:Start|Jump

C/T

NGS:0.011

C90:0.000

0.011
TFL1

UNIPROT

c.302-1G>Asplice acceptor variant&intron variantHIGHcontig1636520616

IGV:Start|Jump

C/T

NGS:0.103

C90:0.794

0.103
HDS-1

UNIPROT

c.1618A>Gp.Ile540Valmissense variantMODERATEcontig1891885936

IGV:Start|Jump

T/C

NGS:0.099

C90:0.861

0.099
HDS-1

UNIPROT

c.1378G>Ap.Val460Ilemissense variantMODERATEcontig1891886370

IGV:Start|Jump

C/T

NGS:0.167

C90:0.000

0.167
HDS-1

UNIPROT

c.-108+1_-108+2insGsplice donor variant&intron variantHIGHcontig1891889975

IGV:Start|Jump

A/AC

NGS:0.217

C90:0.000

0.217
FAD2

UNIPROT

c.124C>Ap.Pro42Thrmissense variantMODERATEcontig14601084136

IGV:Start|Jump

G/T

NGS:0.007

C90:0.000

0.007
PIE1-2

UNIPROT

c.6653A>Gp.Asn2218Sermissense variantMODERATEcontig14601184434

IGV:Start|Jump

T/C

NGS:0.059

C90:0.928

0.059
PIE1-2

UNIPROT

c.6067C>Tp.Arg2023Cysmissense variantMODERATEcontig14601185417

IGV:Start|Jump

G/A

NGS:0.004

C90:0.024

0.004
PIE1-2

UNIPROT

c.5932A>Gp.Ile1978Valmissense variantMODERATEcontig14601185552

IGV:Start|Jump

T/C

NGS:0.061

C90:0.268

0.061
PIE1-2

UNIPROT

c.2188G>Ap.Ala730Thrmissense variantMODERATEcontig14601189852

IGV:Start|Jump

C/T

NGS:0.004

C90:0.134

0.004
PIE1-2

UNIPROT

c.2083_2085delGTCp.Val695delconservative inframe deletionMODERATEcontig14601189954

IGV:Start|Jump

GGAC/G

NGS:0.046

C90:0.880

0.046
PIE1-2

UNIPROT

c.1872T>Ap.Asp624Glumissense variantMODERATEcontig14601190252

IGV:Start|Jump

A/T

NGS:0.086

C90:0.990

0.086
PIE1-2

UNIPROT

c.1630G>Cp.Ala544Promissense variantMODERATEcontig14601191600

IGV:Start|Jump

C/G

NGS:0.070

C90:0.933

0.07
PIE1-2

UNIPROT

c.1289A>Gp.Asp430Glymissense variantMODERATEcontig14601192109

IGV:Start|Jump

T/C

NGS:0.079

C90:0.000

0.079
PIE1-2

UNIPROT

c.982G>Ap.Glu328Lysmissense variantMODERATEcontig14601192416

IGV:Start|Jump

C/T

NGS:0.050

C90:0.976

0.05
PIE1-2

UNIPROT

c.710C>Tp.Pro237Leumissense variantMODERATEcontig14601193804

IGV:Start|Jump

G/A

NGS:0.072

C90:0.866

0.072
PIE1-2

UNIPROT

c.637T>Ap.Ser213Thrmissense variantMODERATEcontig14601194421

IGV:Start|Jump

A/T

NGS:0.079

C90:0.885

0.079
EMF2

UNIPROT

c.434C>Tp.Ser145Phemissense variantMODERATEcontig9543049270

IGV:Start|Jump

C/T

NGS:0.018

C90:0.057

0.018
EMF2

UNIPROT

c.722C>Tp.Thr241Ilemissense variantMODERATEcontig9543050302

IGV:Start|Jump

C/T

NGS:0.018

C90:0.062

0.018
EMF2

UNIPROT

c.1183G>Ap.Glu395Lysmissense variantMODERATEcontig9543054195

IGV:Start|Jump

G/A

NGS:0.009

C90:0.000

0.009
EMF2

UNIPROT

c.1205C>Tp.Ala402Valmissense variant&splice region variantMODERATEcontig9543055694

IGV:Start|Jump

C/T

NGS:0.015

C90:0.053

0.015
EMF2

UNIPROT

c.1228A>Gp.Ser410Glymissense variantMODERATEcontig9543055717

IGV:Start|Jump

A/G

NGS:0.015

C90:0.000

0.015
EMF2

UNIPROT

c.1315G>Cp.Ala439Promissense variantMODERATEcontig9543055804

IGV:Start|Jump

G/C

NGS:0.015

C90:0.053

0.015
EMF2

UNIPROT

c.1742C>Gp.Thr581Sermissense variantMODERATEcontig9543059899

IGV:Start|Jump

C/G

NGS:0.011

C90:0.000

0.011
EMF2

UNIPROT

c.1772A>Gp.Gln591Argmissense variantMODERATEcontig9543059929

IGV:Start|Jump

A/G

NGS:0.092

C90:0.876

0.092
EMF1-1

UNIPROT

c.242A>Gp.Lys81Argmissense variantMODERATEcontig883269731

IGV:Start|Jump

A/G

NGS:0.022

C90:0.053

0.022
FT

UNIPROT

c.35_43dupATAATAATAp.Asn12_Asn14dupdisruptive inframe insertionMODERATEcontig15613124441

IGV:Start|Jump

T/TTAATAATAA

NGS:0.048

C90:0.000

0.048
FT

UNIPROT

c.240C>Gp.Asn80Lysmissense variantMODERATEcontig15613124664

IGV:Start|Jump

C/G

NGS:0.075

C90:0.000

0.075
FT

UNIPROT

c.413_413+1insGTATGCAsplice donor variant&intron variantHIGHcontig15613126450

IGV:Start|Jump

T/TGTATGCA

NGS:0.007

C90:0.000

0.007
FT

UNIPROT

c.419G>Ap.Ser140Asnmissense variantMODERATEcontig15613126658

IGV:Start|Jump

G/A

NGS:0.013

C90:0.033

0.013
FT

UNIPROT

c.435_436insCGTAp.Met146fsframeshift variantHIGHcontig15613126671

IGV:Start|Jump

T/TGTAC

NGS:0.007

C90:0.000

0.007
FT

UNIPROT

c.440A>Cp.Ter147Serext*?stop lost&splice region variantHIGHcontig15613126679

IGV:Start|Jump

A/C

NGS:0.013

C90:0.038

0.013
FLD

UNIPROT

c.2869C>Tp.His957Tyrmissense variantMODERATEcontig14502044163

IGV:Start|Jump

G/A

NGS:0.011

C90:0.000

0.011
FLD

UNIPROT

c.2831A>Gp.Glu944Glymissense variantMODERATEcontig14502044201

IGV:Start|Jump

T/C

NGS:0.011

C90:0.000

0.011
AAE1-3

UNIPROT

c.729G>Tp.Lys243Asnmissense variantMODERATEcontig9761083125

IGV:Start|Jump

C/A

NGS:0.007

C90:0.000

0.007
AAE1-3

UNIPROT

c.722G>Ap.Arg241Lysmissense variantMODERATEcontig9761083132

IGV:Start|Jump

C/T

NGS:0.070

C90:0.000

0.07
AAE1-3

UNIPROT

c.659G>Ap.Arg220Glnmissense variantMODERATEcontig9761083195

IGV:Start|Jump

C/T

NGS:0.077

C90:0.000

0.077
AAE1-3

UNIPROT

c.634G>Cp.Gly212Argmissense variantMODERATEcontig9761083220

IGV:Start|Jump

C/G

NGS:0.116

C90:0.000

0.116
AAE1-3

UNIPROT

c.416T>Cp.Leu139Promissense variantMODERATEcontig9761083609

IGV:Start|Jump

A/G

NGS:0.061

C90:0.000

0.061
AAE1-3

UNIPROT

c.388G>Ap.Gly130Sermissense variantMODERATEcontig9761083637

IGV:Start|Jump

C/T

NGS:0.007

C90:0.000

0.007
AAE1-3

UNIPROT

c.382T>Cp.Tyr128Hismissense variantMODERATEcontig9761083643

IGV:Start|Jump

A/G

NGS:0.072

C90:0.000

0.072
AAE1-3

UNIPROT

c.293A>Gp.Asp98Glymissense variantMODERATEcontig9761083732

IGV:Start|Jump

T/C

NGS:0.068

C90:0.000

0.068
AAE1-3

UNIPROT

c.235A>Cp.Lys79Glnmissense variant&splice region variantMODERATEcontig9761083840

IGV:Start|Jump

T/G

NGS:0.007

C90:0.000

0.007
AAE1-3

UNIPROT

c.199A>Gp.Asn67Aspmissense variantMODERATEcontig9761083876

IGV:Start|Jump

T/C

NGS:0.079

C90:0.000

0.079
AAE1-3

UNIPROT

c.188A>Gp.Asn63Sermissense variantMODERATEcontig9761083887

IGV:Start|Jump

T/C

NGS:0.077

C90:0.000

0.077
AAE1-3

UNIPROT

c.167A>Gp.Glu56Glymissense variantMODERATEcontig9761083908

IGV:Start|Jump

T/C

NGS:0.070

C90:0.000

0.07
AAE1-3

UNIPROT

c.127A>Gp.Ile43Valmissense variantMODERATEcontig9761083948

IGV:Start|Jump

T/C

NGS:0.007

C90:0.000

0.007
AAE1-3

UNIPROT

c.125A>Gp.Glu42Glymissense variantMODERATEcontig9761083950

IGV:Start|Jump

T/C

NGS:0.064

C90:0.000

0.064
AAE1-3

UNIPROT

c.79A>Gp.Thr27Alamissense variantMODERATEcontig9761083996

IGV:Start|Jump

T/C

NGS:0.068

C90:0.000

0.068
AAE1-3

UNIPROT

c.52G>Ap.Gly18Sermissense variantMODERATEcontig9761084023

IGV:Start|Jump

C/T

NGS:0.064

C90:0.000

0.064
PIE1-1

UNIPROT

c.773A>Gp.Asn258Sermissense variant&splice region variantMODERATEcontig12252279897

IGV:Start|Jump

A/G

NGS:0.033

C90:0.895

0.033
PIE1-1

UNIPROT

c.815C>Tp.Pro272Leumissense variantMODERATEcontig12252279939

IGV:Start|Jump

C/T

NGS:0.029

C90:0.885

0.029
PIE1-1

UNIPROT

c.1222C>Gp.Gln408Glumissense variantMODERATEcontig12252281482

IGV:Start|Jump

C/G

NGS:0.096

C90:0.852

0.096
PIE1-1

UNIPROT

c.3619G>Ap.Val1207Metmissense variantMODERATEcontig12252285234

IGV:Start|Jump

G/A

NGS:0.042

C90:0.000

0.042
PIE1-1

UNIPROT

c.3706A>Gp.Thr1236Alamissense variantMODERATEcontig12252285321

IGV:Start|Jump

A/G

NGS:0.004

C90:0.000

0.004
GGR

UNIPROT

c.704A>Tp.His235Leumissense variantMODERATEcontig2282549696

IGV:Start|Jump

A/T

NGS:0.121

C90:0.000

0.121
PKSB-3

UNIPROT

c.509T>Cp.Val170Alamissense variant&splice region variantMODERATEcontig933336743

IGV:Start|Jump

T/C

NGS:0.011

C90:0.000

0.011
PKSB-3

UNIPROT

c.739G>Cp.Glu247Glnmissense variantMODERATEcontig933337057

IGV:Start|Jump

G/C

NGS:0.002

C90:0.000

0.002
PKSB-3

UNIPROT

c.1490C>Tp.Ala497Valmissense variantMODERATEcontig933339597

IGV:Start|Jump

C/T

NGS:0.011

C90:0.000

0.011
PKSB-3

UNIPROT

c.1652A>Gp.Glu551Glymissense variantMODERATEcontig933339759

IGV:Start|Jump

A/G

NGS:0.088

C90:0.000

0.088


NEAREST GENETIC RELATIVES TO CS:
# Relative Genetic Distance
1 RSP10655-Carmagnola 5.47
2 RSP11202-Carmagnola 5.8
3 RSP11037-Carmagnola 5.93
4 RSP10980-Carmagnola 5.98
5 RSP10982-Carmagnola 6.02
6 RSP10978-Carmagnola 6.13
7 RSP11039-Carmagnola 6.13
8 RSP10976-Carmagnola 6.15
9 RSP10977-Carmagnola 6.22
10 RSP10979-Carmagnola 6.32
11 RSP11209-Eletta Campana 6.96
12 RSP11204-Carmagnola USO 31 7.13
13 RSP11207-Carmaleonte 7.19
14 RSP10665-Santhica 27 7.28
15 RSP11206-Feral 7.39
16 RSP11210-Tiborszallasie 7.39
17 RSP10667-Tygra 7.46
18 RSP11203-Fedora 17 7.51
19 RSP10668-Ivory 7.57
20 RSP10658-Lovrin 7.67
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11037-Carmagnola 5.83
2 RSP10979-Carmagnola 5.95
3 RSP10664-Futura 75 7.54
4 RSP10668-Ivory 7.6
5 RSP10667-Tygra 7.64
6 RSP10658-Lovrin 7.65
7 RSP11044-Tisza 7.7
8 RSP10659-Tisza 7.71
9 RSP11047-Santhica27 7.95
10 RSP10661-Fedora 17 8.07
11 RSP10241-Monoica 8.12
12 RSP11051-KYRG-11 8.15
13 RSP10890-Feral 8.56
14 RSP10981-USO 31 8.63
15 RSP11054-Kyrgyz Gold 9.09
16 RSP10653-Jiangji 9.87
17 RSP10755-Recon 10.09
18 RSP11121-RKM-2018-029 10.17
19 RSP11111-RKM-2018-019 10.28
20 RSP10997-Kimbo Slice 10.52
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448804 102 72
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495321 8 7

Blockchain Registration Information:

Transaction ID: 1a165a62ba94d72513ed798a33bd548cca36529f0ac65d492d58a71f24c90813
Stamping Certificate: PDF
SHASUM Hash: 4f33cebd9b856c6acbaba035af1e1fb6ccb1bacb26599283b1cd179fbff3fbb4