Brunswick High

RSP 11164

Grower: Elevation Science

General Information

Sample Name
M-3-19
Accession Date
June 18, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.3%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0395
male female RSP11164

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

THCAS c.1229G>A p.Gly410Glu missense variant moderate contig741 4416599

IGV: Start, Jump

C/T
NGS:
0.039
C90:
0.000
THCAS c.373G>C p.Val125Leu missense variant moderate contig741 4417455

IGV: Start, Jump

C/G
NGS:
0.050
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.73A>T p.Ile25Leu missense variant moderate contig700 1951809

IGV: Start, Jump

T/A
NGS:
0.011
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
FAD2-2

UniProt

c.58C>T p.His20Tyr missense variant moderate contig83 1803311

IGV: Start, Jump

G/A
NGS:
0.013
C90:
0.000
aPT4

UniProt

c.80A>G p.Lys27Arg missense variant moderate contig121 2828736

IGV: Start, Jump

A/G
NGS:
0.061
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.241 RKM-2018-031 (RSP11123)
  2. 0.244 Tangerine Haze (RSP10995)
  3. 0.250 RKM-2018-011 (RSP11102)
  4. 0.251 UP Sunrise (RSP10989)
  5. 0.255 Jacks Cleaner (RSP11347)
  6. 0.256 RKM-2018-006 (RSP11097)
  7. 0.262 North Traveler (RSP11168)
  8. 0.264 Saint Jack (RSP11179)
  9. 0.268 RKM-2018-025 (RSP11117)
  10. 0.270 Black Jack (RSP10603)
  11. 0.271 RKM-2018-016 (RSP11108)
  12. 0.272 BLACK JACK (RSP11346)
  13. 0.273 Blue Dream (RSP11010)
  14. 0.276 Master Kush (RSP11182)
  15. 0.279 Blue Dream (RSP11007)
  16. 0.280 Erez (RSP10942)
  17. 0.280 Big Bud (RSP11221)
  18. 0.280 Serious Happiness (RSP10763)
  19. 0.281 OR (RSP10940)
  20. 0.282 Doug s Varin (RSP11243)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.245 RKM-2018-031 (RSP11123)
  2. 0.255 UP Sunrise (RSP10989)
  3. 0.256 RKM-2018-006 (RSP11097)
  4. 0.288 RKM-2018-018 (RSP11110)
  5. 0.296 Black Beauty (RSP11035)
  6. 0.297 Liberty Haze (RSP11000)
  7. 0.298 Cbot-2019-001 (RSP11129)
  8. 0.300 Italian Kiss (RSP11034)
  9. 0.302 Recon (RSP10755)
  10. 0.305 RKM-2018-027 (RSP11119)
  11. 0.312 RKM-2018-028 (RSP11120)
  12. 0.314 RKM-2018-009 (RSP11100)
  13. 0.315 Durban Poison (RSP11014)
  14. 0.316 Gold Cracker (RSP11048)
  15. 0.319 Hermaphrodite Research Sample1 (RSP11049)
  16. 0.321 QUEEN JESUS (RSP10105)
  17. 0.321 Sour Raspberry (RSP10551)
  18. 0.323 Blue Dream (RSP11033)
  19. 0.326 Tisza (RSP10659)
  20. 0.330 Tygra (RSP10667)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.482 Cherry Blossom (RSP11311)
  2. 0.468 Cherry Blossom (RSP11334)
  3. 0.460 Cherry Blossom (RSP11298)
  4. 0.454 Red Eye OG (RSP11190)
  5. 0.452 Cherry Blossom (RSP11323)
  6. 0.450 RKM-2018-012 (RSP11103)
  7. 0.446 Cherry Blossom (RSP11321)
  8. 0.445 Unknown- Cherry Wine - 002 (RSP11269)
  9. 0.440 Cbot-2019-005 (RSP11133)
  10. 0.440 Cherry Blossom (RSP11308)
  11. 0.439 Cherry Blossom (RSP11335)
  12. 0.438 Star Dawg (RSP11352)
  13. 0.436 Unknown- Cherry Wine - 001 (RSP11268)
  14. 0.435 Abacus (RSP11266)
  15. 0.434 New York City Deisel (RSP11225)
  16. 0.431 Super Sour Diesel (RSP11191)
  17. 0.431 RKM-2018-002 (RSP11093)
  18. 0.427 Kush Hemp E1 (RSP11128)
  19. 0.427 Cherry Blossom (RSP11328)
  20. 0.425 Unknown- Cherry Wine - 003 (RSP11270)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.450 Cbot-2019-005 (RSP11133)
  2. 0.438 Kush Hemp E1 (RSP11128)
  3. 0.435 RKM-2018-002 (RSP11093)
  4. 0.426 Skywalker OG (RSP10837)
  5. 0.413 RKM-2018-034 (RSP11126)
  6. 0.412 RKM-2018-026 (RSP11118)
  7. 0.400 Pie Hoe (RSP11073)
  8. 0.397 Cherry (RSP11142)
  9. 0.396 Cherry (RSP11143)
  10. 0.393 RKM-2018-005 (RSP11096)
  11. 0.385 RKM-2018-032 (RSP11124)
  12. 0.378 Feral (RSP10890)
  13. 0.376 Santhica27 (RSP11047)
  14. 0.370 Carmagnola (RSP11037)
  15. 0.369 RKM-2018-022 (RSP11114)
  16. 0.368 Blueberry Cheesecake (RSP10672)
  17. 0.366 Monoica (RSP10241)
  18. 0.363 RKM-2018-019 (RSP11111)
  19. 0.363 USO 31 (RSP10981)
  20. 0.362 Futura 75 (RSP10664)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347109
Overlapping SNPs:
96
Concordance:
65

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
47f227e08164210de390cf96da6f3d427f7b41d82e38999570e95bf377036409
Stamping Certificate
Download PDF (846.9 KB)
SHASUM Hash
ba3cbf4729926d66c026e8c9663118b3f4001f91a13f95eb6f992dbc835fa925
QR code for RSP11164

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