RKM-2018-003

RSP11094
StrainSEEK Cannabis Certification Report

Accession Date:

September 7, 2018

General Information

Strain: RKM-2018-003
RSP ID: RSP11094
Grower: R-Kiem Seeds
Accession Date: September 7, 2018
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.82
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
DXR-1

UNIPROT

c.139A>Gp.Arg47Glymissense variantMODERATEcontig380235296

IGV:Start|Jump

T/C

NGS:0.020

C90:0.000

0.02
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO RKM-2018-003:
# Relative Genetic Distance
1 RSP10460-Cheese 1.13
2 RSP11112-RKM-2018-020 5.23
3 RSP10990-Italian Kiss 5.48
4 RSP11034-Italian Kiss 5.72
5 RSP10603-Black Jack 5.81
6 RSP11346-BLACK JACK 6.22
7 RSP11108-RKM-2018-016 6.26
8 RSP11117-RKM-2018-025 6.26
9 RSP11243-Doug's Varin 6.3
10 RSP10763-Serious Happiness 6.31
11 RSP11122-RKM-2018-030 6.34
12 RSP11011-Super Blue Dream 6.34
13 RSP10996-Durban Poison 1 6.37
14 RSP11256-UP Sunset 6.45
15 RSP11260-UP The Straits 6.49
16 RSP11014-Durban Poison 6.56
17 RSP10998-Durban Poison 6.57
18 RSP11041-Gold Cracker 6.6
19 RSP11017-Blue Dream 6.61
20 RSP11013-Durban Poison 1 6.63
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11112-RKM-2018-020 5.4
2 RSP11034-Italian Kiss 5.92
3 RSP11119-RKM-2018-027 6.8
4 RSP11120-RKM-2018-028 6.82
5 RSP11014-Durban Poison 6.83
6 RSP11002-CST 6.99
7 RSP11115-RKM-2018-023 7.09
8 RSP11048-Gold Cracker 7.19
9 RSP10991-Golden Goat 2 7.26
10 RSP11097-RKM-2018-006 7.35
11 RSP11038-Skunk 18 7.37
12 RSP11033-Blue Dream 7.48
13 RSP11049-Hermaphrodite Research Sample1 7.6
14 RSP10105-QUEEN JESUS 7.68
15 RSP11110-RKM-2018-018 7.74
16 RSP10989-UP Sunrise 7.79
17 RSP10684-Blueberry Cheesecake 7.82
18 RSP11121-RKM-2018-029 7.94
19 RSP11132-Cbot-2019-004 8.25
20 RSP11050-Hermaphrodite ResearchSample2 8.26
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448559 124 113
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495180 8 8

Blockchain Registration Information:

Transaction ID: 26c1172cbea3c38ec17cffb9af4bd35aae5f994a7d49d4d8385571c8b2539a20
Stamping Certificate: PDF
SHASUM Hash: 5c0ef2eeb82aba530f5741572ff275ffb53d07f5ae1ce84e13c2fea3cd764080