Kompolti
SRR 14708277
General Information
- Sample Name
- HKI
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
|
PKSG-2a | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1944456 | G/C |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2a |
c.-22_2delTA |
p.Met1del | start lost & conservative inframe deletion | high | contig700 | 1945631 |
CATATTATTATT |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.574A>T | p.Met192Leu | missense variant | moderate | contig121 | 2840182 | A/T |
|
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
PKSG-2b | c.1136G>A | p.Arg379His | missense variant | moderate | contig700 | 1950502 | C/T |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
AAE1-3 | c.475G>A | p.Gly159Arg | missense variant | moderate | contig976 | 1083550 | C/T |
|
PKSB-3 | c.1490C>T | p.Ala497Val | missense variant | moderate | contig93 | 3339597 | C/T |
|
Nearest genetic relatives (All Samples)
- 0.070 AOAC MI 545 (RSP11756)
- 0.071 AOAC MI 542 (RSP11755)
- 0.077 AOAC MI 569 (RSP11759)
- 0.078 AOAC MI 508 (RSP11750)
- 0.083 AOAC MI 599 (RSP11762)
- 0.085 AOAC MI 504 (RSP11749)
- 0.085 AOAC MI 533 (RSP11753)
- 0.090 AOAC MI 588 (RSP11760)
- 0.090 AOAC MI 567 (RSP11758)
- 0.092 AOAC MI 535 (RSP11754)
- 0.092 AOAC MI 597 (RSP11761)
- 0.094 AOAC MI 501 (RSP11748)
- 0.095 AOAC MI 532 (RSP11752)
- 0.098 AOAC MI 548 (RSP11757)
- 0.103 Blue Dream (RSP11010)
- 0.103 Super Blue Dream (RSP11011)
- 0.106 Electra (RSP11366)
- 0.115 Blue Dream (RSP11004)
- 0.115 Rest (RSP11377)
- 0.115 Lift (RSP11378)
Nearest genetic relatives (Base Tree)
- 0.159 Liberty Haze (RSP11000)
- 0.182 Futura 75 (RSP10664)
- 0.189 Blueberry Cheesecake (RSP10684)
- 0.203 Hermaphrodite ResearchSample2 (RSP11050)
- 0.204 RKM-2018-003 (RSP11094)
- 0.210 Tygra (RSP10667)
- 0.211 Durban Poison (RSP11014)
- 0.213 Recon (RSP10755)
- 0.219 KYRG-11 (RSP11051)
- 0.220 Lovrin (RSP10658)
- 0.223 RKM-2018-019 (RSP11111)
- 0.227 Italian Kiss (RSP11034)
- 0.227 UP Sunrise (RSP10989)
- 0.231 Carmagnola (RSP11037)
- 0.232 Santhica27 (RSP11047)
- 0.235 Cbot-2019-004 (RSP11132)
- 0.235 Tisza (RSP11044)
- 0.236 Cbot-2019-001 (RSP11129)
- 0.236 Cherry (RSP11142)
- 0.239 Tisza (RSP10659)
Most genetically distant strains (All Samples)
- 0.424 JL 4th Gen 5 (RSP11199)
- 0.423 JL yellow (RSP11075)
- 0.402 JL 4th Gen 6 (RSP11200)
- 0.397 80E (RSP11213)
- 0.387 JL 3rd Gen Mother (RSP11197)
- 0.379 JL 3rd Gen Mother (RSP11214)
- 0.377 JL 4th Gen 1 (RSP11193)
- 0.373 JL 4th Gen 2 (RSP11194)
- 0.362 Tiger Tail 30 (RSP11484)
- 0.360 JL 3rd Gen Father (RSP11196)
- 0.353 Tanao Sri 46 (RSP11486)
- 0.352 Danny Noonan (RSP11070)
- 0.350 JL 4th Gen 4 (RSP11198)
- 0.349 Tanao Sri-white 80 (RSP11621)
- 0.348 80E (RSP11212)
- 0.347 Feral (RSP11205)
- 0.345 Unknown- Cherry Wine - 001 (RSP11268)
- 0.343 JL 2 (RSP11076)
- 0.338 80E (RSP11211)
- 0.336 Chematonic Cannatonic x Chemdawg (RSP11394)
Most genetically distant strains (Base Tree)
- 0.414 JL yellow (RSP11075)
- 0.325 Kush Hemp E1 (RSP11128)
- 0.312 RKM-2018-026 (RSP11118)
- 0.301 Blueberry Cheesecake (RSP10672)
- 0.299 Skywalker OG (RSP10837)
- 0.298 The Gift (RSP10988)
- 0.295 Sour Raspberry (RSP10551)
- 0.290 RKM-2018-033 (RSP11125)
- 0.286 Feral (RSP10890)
- 0.282 RKM-2018-006 (RSP11097)
- 0.282 RKM-2018-034 (RSP11126)
- 0.282 RKM-2018-029 (RSP11121)
- 0.282 Ivory (RSP10668)
- 0.281 Cbot-2019-006 (RSP11134)
- 0.279 Black Beauty (RSP11035)
- 0.279 Skunk 18 (RSP11038)
- 0.278 Cbot-2019-005 (RSP11133)
- 0.275 Fedora 17 (RSP10661)
- 0.274 RKM-2018-022 (RSP11114)
- 0.273 Pie Hoe (RSP11073)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 11
- Concordance:
- 10
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4