Hermaphrodite_Research_Sample1

RSP11049
StrainSEEK Cannabis Certification Report

Accession Date:

January 8, 2018

General Information

Strain: Hermaphrodite_Research_Sample1
RSP ID: RSP11049
Grower: Iron Laboratories
Accession Date: January 8, 2018
Gender: -
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.79
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type II

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO Hermaphrodite_Research_Sample1:
# Relative Genetic Distance
1 RSP11228-Bordello 0.07
2 RSP11042-Hermaphrodite Research Sample1 0.12
3 RSP11110-RKM-2018-018 4.41
4 RSP11010-Blue Dream 4.97
5 RSP11017-Blue Dream 5.44
6 RSP11343-Sour D 5.44
7 RSP11011-Super Blue Dream 5.56
8 RSP10763-Serious Happiness 5.61
9 RSP11009-Blue Dream 5.62
10 RSP11006-Blue Dream 5.63
11 RSP11008-Blue Dream 5.76
12 RSP11004-Blue Dream 5.8
13 RSP10243-East Coast Sour Diesel 5.85
14 RSP11007-Blue Dream 5.89
15 RSP11149-TI 5.93
16 RSP10551-Sour Raspberry 5.99
17 RSP11012-Blue Dream 6.02
18 RSP11184-Domnesia 6.02
19 RSP11003-Snoops Dream 6.07
20 RSP11031-Snoops Dream 6.34
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11110-RKM-2018-018 4.35
2 RSP10551-Sour Raspberry 6.08
3 RSP11120-RKM-2018-028 6.32
4 RSP11093-RKM-2018-002 6.35
5 RSP11124-RKM-2018-032 6.52
6 RSP11033-Blue Dream 6.75
7 RSP11034-Italian Kiss 6.78
8 RSP10684-Blueberry Cheesecake 6.85
9 RSP10991-Golden Goat 2 6.97
10 RSP11100-RKM-2018-009 7.13
11 RSP11097-RKM-2018-006 7.36
12 RSP11073-Pie Hoe 7.56
13 RSP11094-RKM-2018-003 7.6
14 RSP11014-Durban Poison 7.63
15 RSP11119-RKM-2018-027 7.65
16 RSP11048-Gold Cracker 7.66
17 RSP11000-Liberty Haze 7.73
18 RSP11125-RKM-2018-033 7.76
19 RSP11121-RKM-2018-029 7.89
20 RSP11115-RKM-2018-023 7.91
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8347003 117 110

Blockchain Registration Information:

Transaction ID: 9c948f694a4754e3d1579e56324a993e42c45505ad943a92a8a24a509dfa5eca
Stamping Certificate: PDF
SHASUM Hash: c279b7f1ca72f05cdc47f99df7715efae539334ae12d575bb74de8ad3221e19b