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Cherry

RSP 11142

Grower: GHA

General Information

Sample Name
VR3A
Accession Date
April 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.77%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0452
male female RSP11142

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2a

UniProt

c.-22_2delTAAAAATTATAATAATAATAATAT p.Met1del start lost & conservative inframe deletion high contig700 1945631

IGV: Start, Jump

CATATTATTATTATTATAATTTTTA/C
NGS:
0.013
C90:
0.000
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.210 Cherry Wine (RSP11267)
  2. 0.213 Lift (RSP11378)
  3. 0.219 13 Cherries (RSP11442)
  4. 0.230 Electra (RSP11366)
  5. 0.238 Calm (RSP11379)
  6. 0.246 Cherry Blossom (RSP11313)
  7. 0.247 Unknown--Cherry Wine---005- (RSP11272)
  8. 0.250 Cherry Blossom (RSP11333)
  9. 0.260 Domnesia (RSP11184)
  10. 0.260 Durban Poison #1 (RSP10996)
  11. 0.260 Suver Haze (RSP11364)
  12. 0.262 Durban Poison (RSP11014)
  13. 0.262 Durban Poison #1 (RSP11013)
  14. 0.263 Lifter (RSP11365)
  15. 0.266 Blueberry x Tangie (RSP11500)
  16. 0.268 Cherry Blossom (RSP11324)
  17. 0.269 Cherry Blossom (RSP11302)
  18. 0.270 Joy (RSP11380)
  19. 0.270 Cherry Wine (RSP11307)
  20. 0.270 Cherry Blossom (RSP11300)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.275 Durban Poison (RSP11014)
  2. 0.298 UP Sunrise (RSP10989)
  3. 0.304 Blueberry Cheesecake (RSP10684)
  4. 0.306 Cherry (RSP11143)
  5. 0.312 Liberty Haze (RSP11000)
  6. 0.314 Recon (RSP10755)
  7. 0.314 Tisza (RSP10659)
  8. 0.316 Gold Cracker (RSP11048)
  9. 0.317 CST (RSP11002)
  10. 0.318 Blueberry Cheesecake (RSP10672)
  11. 0.320 RKM-2018-019 (RSP11111)
  12. 0.324 RKM-2018-027 (RSP11119)
  13. 0.326 RKM-2018-031 (RSP11123)
  14. 0.331 Hermaphrodite ResearchSample2 (RSP11050)
  15. 0.333 Queen Jesus (RSP10105)
  16. 0.334 Jiangji (RSP10653)
  17. 0.338 RKM-2018-022 (RSP11114)
  18. 0.338 Blue Dream (RSP11033)
  19. 0.339 Tisza (RSP11044)
  20. 0.343 Tygra (RSP10667)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.523 Cherry Blossom (RSP11323)
  2. 0.450 Motor Breath #15 (RSP12093)
  3. 0.446 Chem 91 (RSP11185)
  4. 0.439 Cherry Blossom (RSP11318)
  5. 0.432 JL 3rd Gen Mother (RSP11197)
  6. 0.431 Super Sour Diesel (RSP11191)
  7. 0.430 JL yellow (RSP11075)
  8. 0.429 Triangle Kush x Square Wave BX (RSP12100)
  9. 0.428 RKM-2018-002 (RSP11093)
  10. 0.426 Fatso (RSP11741)
  11. 0.426 Danny Noonan (RSP11070)
  12. 0.425 JL 3rd Gen Mother (RSP11214)
  13. 0.424 Peach Cresendo (RSP12483)
  14. 0.424 GG4 (RSP11978)
  15. 0.420 501st OG (RSP11241)
  16. 0.415 YMCM (RSP11416)
  17. 0.412 Big Bud (SRR14708270)
  18. 0.412 RKM-2018-012 (RSP11103)
  19. 0.410 Pure Power Plant (RSP11265)
  20. 0.409 Red Eye OG (RSP11190)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.433 JL yellow (RSP11075)
  2. 0.432 RKM-2018-002 (RSP11093)
  3. 0.414 Skunk#18 (RSP11038)
  4. 0.410 RKM-2018-026 (RSP11118)
  5. 0.409 Skywalker OG (RSP10837)
  6. 0.408 Hermaphrodite Research Sample1 (RSP11049)
  7. 0.407 RKM-2018-018 (RSP11110)
  8. 0.403 RKM-2018-004 (RSP11096)
  9. 0.402 RKM-2018-034 (RSP11126)
  10. 0.401 RKM-2018-032 (RSP11124)
  11. 0.400 RKM-2018-028 (RSP11120)
  12. 0.400 Blueberry Cheesecake (RSP10680)
  13. 0.399 The Gift (RSP10988)
  14. 0.394 Kush Hemp E1 (RSP11128)
  15. 0.391 Ivory (RSP10668)
  16. 0.390 Cbot-2019-004 (RSP11132)
  17. 0.384 Feral (RSP10890)
  18. 0.383 RKM-2018-033 (RSP11125)
  19. 0.380 Cbot-2019-006 (RSP11134)
  20. 0.378 Sour Raspberry (RSP10551)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349055
Overlapping SNPs:
86
Concordance:
57

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495168
Overlapping SNPs:
8
Concordance:
7

Blockchain Registration Information

Transaction ID
a6bf0be07e288de40d8912e75f35b79974058666ce660030cc1738b99a8057de
Stamping Certificate
Download PDF (857.9 KB)
SHASUM Hash
166d25434004a5180f66e408616f935994ee6bebb1efe0e6da4ff8f61118914e
QR code for RSP11142

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