Cherry
RSP 11142
Grower: GHA
General Information
- Sample Name
- VR3A
- Accession Date
- April 16, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2a |
c.-22_2delTA |
p.Met1del | start lost & conservative inframe deletion | high | contig700 | 1945631 |
CATATTATTATT |
|
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.228 Cherry Wine (RSP11267)
- 0.254 Unknown- Cherry Wine - 005 (RSP11272)
- 0.258 Domnesia (RSP11184)
- 0.260 Durban Poison 1 (RSP10996)
- 0.263 Cherry Blossom (RSP11313)
- 0.267 Durban Poison 1 (RSP11013)
- 0.275 Cherry Blossom (RSP11333)
- 0.275 Cherry Blossom (RSP11317)
- 0.277 Durban Poison (RSP11014)
- 0.285 Cherry Blossom (RSP11332)
- 0.286 Saint Jack (RSP11179)
- 0.286 Strawberry Cough (RSP11356)
- 0.286 Cherry Blossom (RSP11302)
- 0.289 Doug s Varin (RSP11243)
- 0.289 Cherry Blossom (RSP11314)
- 0.291 Durban Poison (RSP11226)
- 0.291 Durban Poison (RSP10998)
- 0.293 2nd Gen Cherry (RSP11141)
- 0.294 Blue Dream (RSP11004)
- 0.294 Cherry Wine (RSP11305)
Nearest genetic relatives (Base Tree)
- 0.284 Durban Poison (RSP11014)
- 0.302 Recon (RSP10755)
- 0.303 Cherry (RSP11143)
- 0.313 Blueberry Cheesecake (RSP10684)
- 0.315 Liberty Haze (RSP11000)
- 0.320 Blueberry Cheesecake (RSP10672)
- 0.321 UP Sunrise (RSP10989)
- 0.322 RKM-2018-019 (RSP11111)
- 0.323 Gold Cracker (RSP11048)
- 0.324 Tisza (RSP10659)
- 0.325 CST (RSP11002)
- 0.329 Lovrin (RSP10658)
- 0.330 RKM-2018-031 (RSP11123)
- 0.330 Tisza (RSP11044)
- 0.331 RKM-2018-027 (RSP11119)
- 0.332 KYRG-11 (RSP11051)
- 0.334 Jiangji (RSP10653)
- 0.334 Hermaphrodite ResearchSample2 (RSP11050)
- 0.337 RKM-2018-022 (RSP11114)
- 0.338 Kyrgyz Gold (RSP11054)
Most genetically distant strains (All Samples)
- 0.539 Cherry Blossom (RSP11323)
- 0.450 Cherry Blossom (RSP11318)
- 0.435 JL 3rd Gen Mother (RSP11197)
- 0.431 Chem 91 (RSP11185)
- 0.425 Super Sour Diesel (RSP11191)
- 0.420 JL yellow (RSP11075)
- 0.419 RKM-2018-002 (RSP11093)
- 0.417 Danny Noonan (RSP11070)
- 0.415 501st OG (RSP11241)
- 0.414 JL 3rd Gen Mother (RSP11214)
- 0.412 Cherry Blossom CBG (RSP11303)
- 0.411 Cherry Blossom (RSP11334)
- 0.410 Bordello (RSP11228)
- 0.408 RKM-2018-012 (RSP11103)
- 0.408 JL 4th Gen 2 (RSP11194)
- 0.407 New York City Deisel (RSP11225)
- 0.404 Cherry Blossom (RSP11325)
- 0.403 RKM-2018-018 (RSP11110)
- 0.403 TI (RSP11149)
- 0.402 JL 4th Gen 1 (RSP11193)
Most genetically distant strains (Base Tree)
- 0.426 RKM-2018-002 (RSP11093)
- 0.420 JL yellow (RSP11075)
- 0.412 RKM-2018-018 (RSP11110)
- 0.410 Hermaphrodite Research Sample1 (RSP11049)
- 0.397 RKM-2018-005 (RSP11096)
- 0.395 RKM-2018-028 (RSP11120)
- 0.395 RKM-2018-032 (RSP11124)
- 0.391 Cbot-2019-004 (RSP11132)
- 0.387 Skunk 18 (RSP11038)
- 0.386 RKM-2018-026 (RSP11118)
- 0.386 RKM-2018-034 (RSP11126)
- 0.382 Blueberry Cheesecake (RSP10680)
- 0.381 Skywalker OG (RSP10837)
- 0.380 The Gift (RSP10988)
- 0.379 RKM-2018-033 (RSP11125)
- 0.379 Black Beauty (RSP11035)
- 0.378 Cbot-2019-005 (RSP11133)
- 0.377 Kush Hemp E1 (RSP11128)
- 0.376 Sour Raspberry (RSP10551)
- 0.374 RKM-2018-023 (RSP11115)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 86
- Concordance:
- 57
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 8
- Concordance:
- 7
Blockchain Registration Information
- Transaction ID
-
a6bf0be07e288de4
0d8912e75f35b799 74058666ce660030 cc1738b99a8057de - Stamping Certificate
- Download PDF (857.9 KB)
- SHASUM Hash
-
166d25434004a518
0f66e408616f9359 94ee6bebb1efe0e6 da4ff8f61118914e