SFVxTK

RSP11072
StrainSEEK Cannabis Certification Report

Accession Date:

May 15, 2018

General Information

Strain: SFVxTK
RSP ID: RSP11072
Grower: Jungle Boys (Kyle)
Accession Date: May 15, 2018
Gender: -
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.91
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.998C>Gp.Pro333Argmissense variantMODERATEcontig7414416830

IGV:Start|Jump

G/C

NGS:0.182

C90:0.000

0.182



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.995C>Tp.Ser332Phemissense variantMODERATEcontig7001950643

IGV:Start|Jump

G/A

NGS:0.042

C90:0.000

0.042
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805


NEAREST GENETIC RELATIVES TO SFVxTK:
# Relative Genetic Distance
1 RSP10837-Skywalker OG 0.12
2 RSP11190-Red Eye OG 0.16
3 RSP11104-RKM-2018-013 1.77
4 RSP11353-Rugburn OG 2.25
5 RSP11241-501st OG 3.42
6 RSP11103-RKM-2018-012 4.19
7 RSP11118-RKM-2018-026 4.22
8 RSP11126-RKM-2018-034 4.31
9 RSP11265-Pure Power Plant 4.45
10 RSP11073-Pie Hoe 4.52
11 RSP11167-Casco Kush 4.71
12 RSP11231-Gorilla Cookies 4.84
13 RSP11071-Sunday Driver 5.02
14 RSP11341-Garlic 5.15
15 RSP11099-RKM-2018-008 5.16
16 RSP10988-The Gift 5.33
17 RSP11355-SHERBERT 5.49
18 RSP11050-Hermaphrodite ResearchSample2 5.94
19 RSP11266-Abacus 6
20 RSP11124-RKM-2018-032 6.02
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP10837-Skywalker OG 0.11
2 RSP11118-RKM-2018-026 4.28
3 RSP11126-RKM-2018-034 4.42
4 RSP11073-Pie Hoe 4.6
5 RSP10988-The Gift 5.17
6 RSP11050-Hermaphrodite ResearchSample2 6.07
7 RSP11124-RKM-2018-032 6.19
8 RSP11093-RKM-2018-002 6.49
9 RSP11125-RKM-2018-033 7.29
10 RSP10997-Kimbo Slice 7.36
11 RSP11112-RKM-2018-020 7.37
12 RSP11096-RKM-2018-005 7.64
13 RSP11000-Liberty Haze 7.71
14 RSP10684-Blueberry Cheesecake 7.85
15 RSP11128-Kush Hemp E1 7.96
16 RSP11048-Gold Cracker 8.08
17 RSP10680-Blueberry Cheesecake 8.09
18 RSP11049-Hermaphrodite Research Sample1 8.12
19 RSP11100-RKM-2018-009 8.55
20 RSP11014-Durban Poison 8.6
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8347029 120 120
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495293 14 14

Blockchain Registration Information:

Transaction ID: 0d58f3ff72d7e4c41631d2d052909a30468006a7c96b0c0c639517f7a8976795
Stamping Certificate: PDF
SHASUM Hash: f8a7bf4ace12ddc341563a3b7002af1559385a7c2421dca5a0486d71197b801d