Sunday Driver

RSP 11071

Grower: Jungle Boys (Kyle)

General Information

Accession Date
May 14, 2018
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.97%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0464
male female RSP11071

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.117 Hermaphrodite ResearchSample2 (RSP11050)
  2. 0.126 Hermaphrodite ResearchSample2 (RSP11043)
  3. 0.182 Pie Hoe (RSP11073)
  4. 0.186 Skywalker OG (RSP10837)
  5. 0.186 SFVxTK (RSP11072)
  6. 0.204 Rugburn OG (RSP11353)
  7. 0.204 Old Family Purple (RSP12098)
  8. 0.205 SHERBERT (RSP11355)
  9. 0.206 Wedding Pie (RSP11745)
  10. 0.208 Absolute OG (RSP11455)
  11. 0.210 East side OG (RSP12089)
  12. 0.211 Grape Stomper (RSP11180)
  13. 0.213 Red Eye OG (RSP11190)
  14. 0.213 RKM-2018-034 (RSP11126)
  15. 0.213 Gorilla Cookies (RSP11231)
  16. 0.214 NSPM1 (RSP11362)
  17. 0.216 Blueberry Cheesecake (RSP10680)
  18. 0.217 Blueberry Cheesecake (RSP10684)
  19. 0.217 Jilly bean (RSP11230)
  20. 0.217 Serious Happiness (RSP10763)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.122 Hermaphrodite ResearchSample2 (RSP11050)
  2. 0.195 Pie Hoe (RSP11073)
  3. 0.195 Skywalker OG (RSP10837)
  4. 0.208 Blueberry Cheesecake (RSP10680)
  5. 0.210 Blueberry Cheesecake (RSP10684)
  6. 0.222 RKM-2018-034 (RSP11126)
  7. 0.224 Liberty Haze (RSP11000)
  8. 0.236 Kimbo Slice (RSP10997)
  9. 0.244 The Gift (RSP10988)
  10. 0.247 RKM-2018-026 (RSP11118)
  11. 0.248 RKM-2018-032 (RSP11124)
  12. 0.250 Durban Poison (RSP11014)
  13. 0.255 Recon (RSP10755)
  14. 0.259 RKM-2018-020 (RSP11112)
  15. 0.261 RKM-2018-033 (RSP11125)
  16. 0.266 Gold Cracker (RSP11048)
  17. 0.277 Queen Jesus (RSP10105)
  18. 0.277 UP Sunrise (RSP10989)
  19. 0.278 RKM-2018-009 (RSP11100)
  20. 0.285 Cbot-2019-006 (RSP11134)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.433 Cherry Blossom (RSP11323)
  2. 0.427 Cherry Blossom (RSP11318)
  3. 0.412 Cherry Blossom (RSP11328)
  4. 0.406 Tanao Sri -46- (RSP11486)
  5. 0.404 Unknown--Cherry Wine---001- (RSP11268)
  6. 0.398 Cherry Blossom (RSP11298)
  7. 0.393 Cherry Blossom (RSP11312)
  8. 0.390 Cherry Blossom (RSP11311)
  9. 0.387 Unknown--Cherry Wine---003- (RSP11270)
  10. 0.386 Cherry Blossom (RSP11309)
  11. 0.385 80E (RSP11213)
  12. 0.381 CS Indica (RSP11658)
  13. 0.378 CS (RSP11208)
  14. 0.377 Feral (RSP11206)
  15. 0.377 Avidekel 05MAY2017 (RSP10938)
  16. 0.377 Tiger Tail -30- (RSP11484)
  17. 0.377 Cherry Blossom (RSP11301)
  18. 0.375 Northern Skunk (RSP11456)
  19. 0.374 Unknown--Cherry Wine---002- (RSP11269)
  20. 0.373 Chematonic -Cannatonic x Chemdawg- (RSP11394)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.368 JL yellow (RSP11075)
  2. 0.356 Carmagnola (RSP11037)
  3. 0.355 Cbot-2019-001 (RSP11129)
  4. 0.350 Cbot-2019-005 (RSP11133)
  5. 0.344 Cherry (RSP11143)
  6. 0.335 Monoica (RSP10241)
  7. 0.334 RKM-2018-018 (RSP11110)
  8. 0.332 Cherry (RSP11142)
  9. 0.332 Carmagnola (RSP10979)
  10. 0.331 Feral (RSP10890)
  11. 0.329 Santhica27 (RSP11047)
  12. 0.329 Lovrin (RSP10658)
  13. 0.327 RKM-2018-028 (RSP11120)
  14. 0.325 Blueberry Cheesecake (RSP10672)
  15. 0.324 Black Beauty (RSP11035)
  16. 0.324 Jiangji (RSP10653)
  17. 0.317 RKM-2018-027 (RSP11119)
  18. 0.317 RKM-2018-023 (RSP11115)
  19. 0.317 RKM-2018-019 (RSP11111)
  20. 0.315 Fedora 17 (RSP10661)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347233
Overlapping SNPs:
106
Concordance:
75

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495251
Overlapping SNPs:
7
Concordance:
7

Blockchain Registration Information

Transaction ID
2eb489ec1d65d884709b1410d028719835b0734e8460b174db18cb1f54b8e96a
Stamping Certificate
Download PDF (849.3 KB)
SHASUM Hash
cade0ea3740ad55ba25e09ae83af46e7162c6b008cbc1fa6c8db3507151ed581
QR code for RSP11071

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