Abacus

RSP11266
StrainSEEK Cannabis Certification Report

Accession Date:

September 18, 2019

General Information

Strain: Abacus
Sample: Purple Hemp 1
RSP ID: RSP11266
Grower: Leistikow Family LP
Accession Date: September 18, 2019
Gender: Male
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.6
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type III

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-4a

UNIPROT

c.49_50insTGGp.Glu16_Gly17insValdisruptive inframe insertionMODERATEcontig7001936744

IGV:Start|Jump

A/AGGT

NGS:0.013

C90:0.000

0.013
PKSG-4a

UNIPROT

c.1191_1193delTTAp.Tyr398deldisruptive inframe deletionMODERATEcontig7001938600

IGV:Start|Jump

AATT/A

NGS:0.167

C90:0.000

0.167
PKSG-2a

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001944616

IGV:Start|Jump

C/T

NGS:0.123

C90:0.000

0.123
PKSG-2a

UNIPROT

c.241G>Ap.Val81Metmissense variantMODERATEcontig7001945149

IGV:Start|Jump

C/T

NGS:0.136

C90:0.000

0.136
PKSG-2a

UNIPROT

c.240T>Gp.Asp80Glumissense variantMODERATEcontig7001945150

IGV:Start|Jump

A/C

NGS:0.136

C90:0.000

0.136
PKSG-2a

UNIPROT

c.230T>Cp.Val77Alamissense variantMODERATEcontig7001945160

IGV:Start|Jump

A/G

NGS:0.114

C90:0.000

0.114
PKSG-2a

UNIPROT

c.224A>Gp.Lys75Argmissense variantMODERATEcontig7001945166

IGV:Start|Jump

T/C

NGS:0.143

C90:0.962

0.143
PKSG-2a

UNIPROT

c.188T>Gp.Ile63Sermissense variantMODERATEcontig7001945202

IGV:Start|Jump

A/C

NGS:0.101

C90:0.000

0.101
PKSG-2a

UNIPROT

c.187A>Tp.Ile63Phemissense variantMODERATEcontig7001945203

IGV:Start|Jump

T/A

NGS:0.101

C90:0.000

0.101
PKSG-2a

UNIPROT

c.167C>Gp.Thr56Sermissense variantMODERATEcontig7001945223

IGV:Start|Jump

G/C

NGS:0.075

C90:0.000

0.075
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2a

UNIPROT

c.-2_1delATAp.Met1delstart lost&conservative inframe deletionHIGHcontig7001945632

IGV:Start|Jump

ATAT/A

NGS:0.009

C90:0.000

0.009
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1124G>Cp.Arg375Thrmissense variantMODERATEcontig7001950514

IGV:Start|Jump

C/G

NGS:0.015

C90:0.000

0.015
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.1105C>Gp.Pro369Alamissense variantMODERATEcontig7001950533

IGV:Start|Jump

G/C

NGS:0.013

C90:0.000

0.013
PKSG-2b

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001950864

IGV:Start|Jump

C/T

NGS:0.366

C90:0.947

0.366
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.353_354insCCp.Gly119fsframeshift variantHIGHcontig7002721319

IGV:Start|Jump

T/TGG

NGS:0.175

C90:0.000

0.175
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
aPT4

UNIPROT

c.80A>Gp.Lys27Argmissense variantMODERATEcontig1212828736

IGV:Start|Jump

A/G

NGS:0.061

C90:0.000

0.061
aPT4

UNIPROT

c.202T>Ap.Leu68Ilemissense variantMODERATEcontig1212828858

IGV:Start|Jump

T/A

NGS:0.068

C90:0.000

0.068
aPT4

UNIPROT

c.216A>Tp.Lys72Asnmissense variantMODERATEcontig1212828872

IGV:Start|Jump

A/T

NGS:0.075

C90:0.000

0.075
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.160A>Cp.Thr54Promissense variantMODERATEcontig1212835867

IGV:Start|Jump

A/C

NGS:0.086

C90:0.048

0.086
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.670T>Ap.Ser224Thrmissense variantMODERATEcontig1212840278

IGV:Start|Jump

T/A

NGS:0.077

C90:0.000

0.077
aPT1

UNIPROT

c.727G>Tp.Glu243*stop gainedHIGHcontig1212841362

IGV:Start|Jump

G/T

NGS:0.127

C90:0.100

0.127
aPT1

UNIPROT

c.864C>Gp.Asn288Lysmissense variantMODERATEcontig1212842407

IGV:Start|Jump

C/G

NGS:0.075

C90:0.062

0.075
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721
HDS-1

UNIPROT

c.-108+1_-108+2insGsplice donor variant&intron variantHIGHcontig1891889975

IGV:Start|Jump

A/AC

NGS:0.217

C90:0.000

0.217


NEAREST GENETIC RELATIVES TO Abacus:
# Relative Genetic Distance
1 RSP11353-Rugburn OG 5.23
2 RSP11241-501st OG 5.34
3 RSP11093-RKM-2018-002 5.38
4 RSP11352-Star Dawg 5.66
5 RSP11103-RKM-2018-012 5.79
6 RSP11072-SFVxTK 6
7 RSP11191-Super Sour Diesel 6.01
8 RSP11341-Garlic 6.15
9 RSP10837-Skywalker OG 6.35
10 RSP11343-Sour D 6.41
11 RSP11124-RKM-2018-032 6.41
12 RSP11113-RKM-2018-021 6.55
13 RSP11109-RKM-2018-017 6.56
14 RSP11104-RKM-2018-013 6.59
15 RSP11265-Pure Power Plant 6.73
16 RSP11354-Dominion Skunk 6.77
17 RSP11190-Red Eye OG 6.79
18 RSP10243-East Coast Sour Diesel 7
19 RSP11356-Strawberry Cough 7.11
20 RSP11225-New York City Deisel 7.15
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11093-RKM-2018-002 5.44
2 RSP10837-Skywalker OG 5.86
3 RSP11124-RKM-2018-032 6.37
4 RSP11050-Hermaphrodite ResearchSample2 7.27
5 RSP11118-RKM-2018-026 7.34
6 RSP11096-RKM-2018-005 7.44
7 RSP11073-Pie Hoe 7.59
8 RSP11049-Hermaphrodite Research Sample1 7.62
9 RSP10988-The Gift 7.64
10 RSP11125-RKM-2018-033 7.82
11 RSP11100-RKM-2018-009 7.91
12 RSP11126-RKM-2018-034 8
13 RSP11048-Gold Cracker 8.07
14 RSP10684-Blueberry Cheesecake 8.41
15 RSP11112-RKM-2018-020 8.47
16 RSP11121-RKM-2018-029 8.5
17 RSP11000-Liberty Haze 8.63
18 RSP11014-Durban Poison 8.63
19 RSP10680-Blueberry Cheesecake 8.87
20 RSP11134-Cbot-2019-006 8.91
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8346962 65 51
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495290 9 8

Blockchain Registration Information:

Transaction ID: b3eaef68080c26c62f527444f069cd4d00647f5240702d4898ca24a0f0aa89f4
Stamping Certificate: PDF
SHASUM Hash: f01468e91b93de83410841979534c7fb167ea1122dc8667f32d16e0f06cfcea2