Skunk#18

RSP11038
StrainSEEK Cannabis Certification Report

Accession Date:

November 20, 2017

General Information

Strain: Skunk#18
RSP ID: RSP11038
Grower: The Nature Farm
Accession Date: November 20, 2017
Gender: Female
Strain Seek Version: V2


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Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.62
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.998C>Gp.Pro333Argmissense variantMODERATEcontig7414416830

IGV:Start|Jump

G/C

NGS:0.182

C90:0.000

0.182



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
aPT4

UNIPROT

c.775delTp.Tyr259fsframeshift variantHIGHcontig1212831380

IGV:Start|Jump

AT/A

NGS:0.224

C90:0.000

0.224
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561


NEAREST GENETIC RELATIVES TO Skunk#18:
# Relative Genetic Distance
1 RSP11030-Skunk 18 0.14
2 RSP11115-RKM-2018-023 6.37
3 RSP10991-Golden Goat 2 6.93
4 RSP11041-Gold Cracker 7.06
5 RSP11344-Square Wave 7.25
6 RSP11013-Durban Poison 1 7.3
7 RSP11110-RKM-2018-018 7.31
8 RSP11011-Super Blue Dream 7.35
9 RSP11222-Glueberry OG 7.42
10 RSP10460-Cheese 7.43
11 RSP11048-Gold Cracker 7.5
12 RSP11261-UP Wendigo 7.56
13 RSP11094-RKM-2018-003 7.56
14 RSP11127-Jamaican Lions Ancestor 7.59
15 RSP11351-T S A G E 7.64
16 RSP10998-Durban Poison 7.66
17 RSP11125-RKM-2018-033 7.68
18 RSP11119-RKM-2018-027 7.74
19 RSP11014-Durban Poison 7.74
20 RSP11171-Alaska USA 7.76
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11115-RKM-2018-023 6.38
2 RSP10991-Golden Goat 2 7.01
3 RSP11094-RKM-2018-003 7.37
4 RSP11048-Gold Cracker 7.38
5 RSP11125-RKM-2018-033 7.54
6 RSP11110-RKM-2018-018 7.64
7 RSP11014-Durban Poison 7.8
8 RSP11119-RKM-2018-027 7.83
9 RSP11112-RKM-2018-020 7.86
10 RSP10680-Blueberry Cheesecake 7.87
11 RSP11120-RKM-2018-028 7.94
12 RSP11073-Pie Hoe 8.01
13 RSP11134-Cbot-2019-006 8.11
14 RSP10684-Blueberry Cheesecake 8.21
15 RSP10997-Kimbo Slice 8.21
16 RSP11050-Hermaphrodite ResearchSample2 8.23
17 RSP11097-RKM-2018-006 8.27
18 RSP10988-The Gift 8.35
19 RSP11000-Liberty Haze 8.37
20 RSP11033-Blue Dream 8.4
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448331 110 70
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495279 17 15

Blockchain Registration Information:

Transaction ID: a60cf28d7a7407677c13b50245f977c48a73be7e54d4e087194b337e651d8b85
Stamping Certificate: PDF
SHASUM Hash: 9aea893ec5430702f384b43cfff424c4600c8263f99d697b0062d4152b462cf3