Blueberry Cheesecake

RSP 10671

Grower: NA

General Information

Sample Name
Blueberry Cheesecake Yellow Clone Gen2_23JAN2017
Accession Date
February 14, 2017
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.95%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0400
male female RSP10671

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

DXR-1

UniProt

c.139A>G p.Arg47Gly missense variant moderate contig380 235296

IGV: Start, Jump

T/C
NGS:
0.020
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.005 Blueberry Cheesecake (RSP10672)
  2. 0.005 Blueberry Cheesecake (RSP10670)
  3. 0.043 JL#2 (RSP11076)
  4. 0.181 BlueBerry Cheesecake x JL Male (RSP11201)
  5. 0.191 Blueberry Cheesecake (RSP10646)
  6. 0.212 Blueberry Cheesecake (RSP10684)
  7. 0.230 RKM-2018-031 (RSP11123)
  8. 0.235 Joy (RSP11380)
  9. 0.235 Lift (RSP11378)
  10. 0.237 Serious Happiness (RSP10763)
  11. 0.238 Harlox (RSP10641)
  12. 0.238 Badger (RSP11614)
  13. 0.239 Electra (RSP11366)
  14. 0.245 Durban Poison (RSP11014)
  15. 0.247 JL Compost (RSP11657)
  16. 0.248 Queen Jesus (RSP10105)
  17. 0.251 CST (RSP11002)
  18. 0.251 Durban Poison #1 (RSP11013)
  19. 0.251 Suver Haze (RSP11364)
  20. 0.251 SPQ -quite resistant- (RSP11370)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.405 Cherry Blossom (RSP11323)
  2. 0.402 Cherry Blossom CBG (RSP11303)
  3. 0.399 Big Bud (SRR14708270)
  4. 0.395 Cherry Blossom (RSP11301)
  5. 0.394 Cherry Blossom (RSP11328)
  6. 0.390 Feral (RSP11205)
  7. 0.390 Cherry Blossom (RSP11309)
  8. 0.390 Feral (RSP10890)
  9. 0.390 JL 3rd Gen Father (RSP11196)
  10. 0.389 Kush Hemp E1 (RSP11128)
  11. 0.387 80E (RSP11213)
  12. 0.387 RKM-2018-026 (RSP11118)
  13. 0.385 R1in136 (SRR14708226)
  14. 0.385 Cherry Blossom (RSP11329)
  15. 0.384 Cherry Blossom (RSP11298)
  16. 0.384 80E (RSP11212)
  17. 0.382 Red Eye OG (RSP11190)
  18. 0.381 Cherry Blossom (RSP11306)
  19. 0.381 Cherry Blossom (RSP11317)
  20. 0.379 Cherry Blossom (RSP11333)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347130
Overlapping SNPs:
101
Concordance:
67

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495248
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
801be8e380fb376518a57d8305fb46a4ef594d1e47209c0470c4c38836121c19
Stamping Certificate
Download PDF (852.2 KB)
SHASUM Hash
accfe3809ac87b1dd523f8fd8bfebc674c36a770499c85ee191e3208f2a9c97c
QR code for RSP10671

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