Chem Dog 91

RSP 12905

Grower: Collin Palmer

General Information

Sample Name
Chem Dog 91
Accession Date
September 6, 2023
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.06%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0292
male female RSP12905

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)

EMF1-2

UniProt

c.634G>C p.Val212Leu missense variant moderate contig885 734

IGV: Start, Jump

G/C
NGS:
0.015
C90:
0.239
EMF1-2

UniProt

c.710A>C p.His237Pro missense variant moderate contig885 810

IGV: Start, Jump

A/C
NGS:
0.090
C90:
0.474
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
PHL-2 c.3552delG p.Lys1185fs frameshift variant high contig2621 343593

IGV: Start, Jump

CG/C
NGS:
0.004
C90:
0.000
ELF3

UniProt

c.1466G>A p.Ser489Asn missense variant moderate contig97 244297

IGV: Start, Jump

G/A
NGS:
0.123
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
AAE1-2

UniProt

c.948_949insA p.Asp317fs frameshift variant high contig81 209910

IGV: Start, Jump

C/CA
NGS:
0.050
C90:
0.000
AAE1-2

UniProt

c.952delC p.Gln318fs frameshift variant high contig81 209912

IGV: Start, Jump

AC/A
NGS:
0.050
C90:
0.000
PHL-1

UniProt

c.2561A>T p.Asn854Ile missense variant moderate contig1439 1487236

IGV: Start, Jump

T/A
NGS:
0.046
C90:
0.612
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.099
C90:
0.861
HDS-1

UniProt

c.1381G>A p.Asp461Asn missense variant moderate contig1891 886367

IGV: Start, Jump

C/T
NGS:
0.029
C90:
0.000
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
EMF2

UniProt

c.1772A>G p.Gln591Arg missense variant moderate contig954 3059929

IGV: Start, Jump

A/G
NGS:
0.092
C90:
0.876
AAE1-3

UniProt

c.416T>C p.Leu139Pro missense variant moderate contig976 1083609

IGV: Start, Jump

A/G
NGS:
0.061
C90:
0.000
AAE1-3

UniProt

c.382T>C p.Tyr128His missense variant moderate contig976 1083643

IGV: Start, Jump

A/G
NGS:
0.072
C90:
0.000
AAE1-3

UniProt

c.52G>A p.Gly18Ser missense variant moderate contig976 1084023

IGV: Start, Jump

C/T
NGS:
0.064
C90:
0.000
PIE1-1

UniProt

c.6725C>T p.Ala2242Val missense variant moderate contig1225 2289290

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.737

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.248 Garlic (RSP11341)
  2. 0.250 Hermaphrodite ResearchSample2 (RSP11050)
  3. 0.252 Hermaphrodite ResearchSample2 (RSP11043)
  4. 0.259 Animal Tree (RSP12791)
  5. 0.263 Permanent Marker (RSP12907)
  6. 0.265 Peanut Butter Breath (RSP11640)
  7. 0.274 The Gift (RSP10988)
  8. 0.275 Animal Tree x Skittles 2 (RSP12793)
  9. 0.277 Biker Kush (RSP12910)
  10. 0.278 White Burgundy (RSP12900)
  11. 0.278 Glitter Bomb (RSP12901)
  12. 0.278 MENDO BREATH (RSP11242)
  13. 0.279 Watermelon Rush (RSP12908)
  14. 0.280 Gorilla Cookies (RSP11231)
  15. 0.280 Domnesia (RSP11184)
  16. 0.280 Rest (RSP11377)
  17. 0.281 El Presidente (RSP12807)
  18. 0.282 GMO (RSP12091)
  19. 0.283 NSPM x NSPM (RSP11487)
  20. 0.285 GMO x Garlic Breath (RSP12507)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.500 Cherry Blossom (RSP11318)
  2. 0.492 Cherry Blossom (RSP11323)
  3. 0.487 Cherry Blossom (RSP11328)
  4. 0.485 Cherry Blossom (RSP11312)
  5. 0.471 Cherry Blossom (RSP11298)
  6. 0.469 Cherry Blossom (RSP11306)
  7. 0.465 Cherry Blossom (RSP11330)
  8. 0.461 Cherry Blossom (RSP11309)
  9. 0.460 Unknown- Cherry Wine - 001 (RSP11268)
  10. 0.458 HM (RSP12940)
  11. 0.456 Cherry Blossom (RSP11325)
  12. 0.455 Cherry Blossom (RSP11327)
  13. 0.453 Tanao Sri 46 (RSP11486)
  14. 0.452 Cherry Blossom (RSP11274)
  15. 0.450 Unknown- Cherry Wine - 003 (RSP11270)
  16. 0.450 Cherry Blossom (RSP11317)
  17. 0.444 Cherry Blossom (RSP11315)
  18. 0.442 Cherry Blossom (RSP11326)
  19. 0.441 Cherry Blossom (RSP11322)
  20. 0.437 Cherry Blossom (RSP11301)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346723
Overlapping SNPs:
83
Concordance:
55

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
fc42bee00a35b319fe3f34db1e1e18bb35c1d8d830549e9c63d0eb429a4132b4
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
cb80c796bdaec1cbc6313a49efdb305c0430a3d2bc18912ef01cb4e9415cd170
QR code for RSP12905

Kannapedia uses cookies

By clicking Allow All, you agree to the storing of cookies on your device to enhance site navigation, analyze site usage, and assist in our marketing efforts.

Customize Settings