BLACK JACK

RSP11346
StrainSEEK Cannabis Certification Report

Accession Date:

October 22, 2019

Summary

BLACK JACK (RSP11346/Happy Valley) is a genetic Type I plant and its genetics appear uncommon. The sample's closest relative in the database is RKM-2018-016 (RSP11108/R-Kiem Seeds) and it is a probable clone. The heterozygosity rate is 1.1% which is average (52.0 percentile).

General Information

Strain: BLACK JACK
RSP ID: RSP11346
Grower: Happy Valley
Accession Date: October 22, 2019
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.1
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.749C>Ap.Ala250Aspmissense variantMODERATEcontig7414417079

IGV:Start|Jump

G/T

NGS:0.127

C90:0.632

0.127



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
PKSG-4b

UNIPROT

c.323A>Gp.Glu108Glymissense variantMODERATEcontig7002721350

IGV:Start|Jump

T/C

NGS:0.469

C90:0.000

0.469
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
FAD2-2

UNIPROT

c.182T>Ap.Val61Glumissense variantMODERATEcontig831803187

IGV:Start|Jump

A/T

NGS:0.007

C90:0.000

0.007
FAD2-2

UNIPROT

c.172G>Tp.Asp58Tyrmissense variantMODERATEcontig831803197

IGV:Start|Jump

C/A

NGS:0.070

C90:0.000

0.07
FAD2-2

UNIPROT

c.161T>Ap.Leu54Hismissense variantMODERATEcontig831803208

IGV:Start|Jump

A/T

NGS:0.156

C90:0.000

0.156
aPT4

UNIPROT

c.80A>Gp.Lys27Argmissense variantMODERATEcontig1212828736

IGV:Start|Jump

A/G

NGS:0.061

C90:0.000

0.061
aPT4

UNIPROT

c.97T>Cp.Tyr33Hismissense variantMODERATEcontig1212828753

IGV:Start|Jump

T/C

NGS:0.439

C90:0.000

0.439
aPT4

UNIPROT

c.153A>Cp.Lys51Asnmissense variantMODERATEcontig1212828809

IGV:Start|Jump

A/C

NGS:0.375

C90:0.000

0.375
aPT4

UNIPROT

c.202T>Ap.Leu68Ilemissense variantMODERATEcontig1212828858

IGV:Start|Jump

T/A

NGS:0.068

C90:0.000

0.068
aPT4

UNIPROT

c.775delTp.Tyr259fsframeshift variantHIGHcontig1212831380

IGV:Start|Jump

AT/A

NGS:0.224

C90:0.000

0.224
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO BLACK JACK:
# Relative Genetic Distance
1 RSP11108-RKM-2018-016 0
2 RSP11117-RKM-2018-025 0.01
3 RSP10603-Black Jack 0.17
4 RSP11119-RKM-2018-027 0.78
5 RSP10996-Durban Poison 1 4.09
6 RSP11041-Gold Cracker 4.1
7 RSP11048-Gold Cracker 4.23
8 RSP11179-Saint Jack 4.26
9 RSP11013-Durban Poison 1 4.38
10 RSP10998-Durban Poison 4.47
11 RSP11014-Durban Poison 4.49
12 RSP10460-Cheese 4.99
13 RSP10995-Tangerine Haze 5.03
14 RSP11336-White Label 1 5.15
15 RSP10989-UP Sunrise 5.16
16 RSP11192-Headcheese 5.23
17 RSP11011-Super Blue Dream 5.25
18 RSP11102-RKM-2018-011 5.27
19 RSP11226-Durban Poison 5.36
20 RSP11017-Blue Dream 5.43
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11119-RKM-2018-027 0.77
2 RSP11014-Durban Poison 4.22
3 RSP11048-Gold Cracker 4.31
4 RSP10989-UP Sunrise 5.55
5 RSP11112-RKM-2018-020 6.12
6 RSP11034-Italian Kiss 6.15
7 RSP11123-RKM-2018-031 6.19
8 RSP11097-RKM-2018-006 6.26
9 RSP11000-Liberty Haze 6.33
10 RSP11094-RKM-2018-003 6.36
11 RSP11033-Blue Dream 6.36
12 RSP11115-RKM-2018-023 6.51
13 RSP10684-Blueberry Cheesecake 6.72
14 RSP11100-RKM-2018-009 6.75
15 RSP10991-Golden Goat 2 6.84
16 RSP11002-CST 6.93
17 RSP11049-Hermaphrodite Research Sample1 6.98
18 RSP11110-RKM-2018-018 7.01
19 RSP11050-Hermaphrodite ResearchSample2 7.11
20 RSP11132-Cbot-2019-004 7.25
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8349002 64 59
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495239 7 7

Blockchain Registration Information:

Transaction ID: e84594ced78734fa508ffc9e9cc2fa34f1831db702e3ff7db513e35f9c2628da
Stamping Certificate: PDF
SHASUM Hash: fa440a6557f15ee266b8ca9483458b26a297b2a9b5e3e59abfbcf73f6c882209