USO31

RSP10233
StrainSEEK Cannabis Certification Report

Accession Date:

May 13, 2016

General Information

Strain: USO31
Sample: USO31-3
RSP ID: RSP10233
Grower: CSU
Accession Date: May 13, 2016
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.21
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type III

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
CBDASc.221C>Gp.Thr74Sermissense variantMODERATEcontig17722082447

IGV:Start|Jump

C/G

NGS:0.136

C90:0.057

0.136



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
aPT4

UNIPROT

c.470T>Cp.Leu157Sermissense variantMODERATEcontig1212830665

IGV:Start|Jump

T/C

NGS:0.007

C90:0.000

0.007
aPT4

UNIPROT

c.517A>Tp.Ile173Leumissense variant&splice region variantMODERATEcontig1212830795

IGV:Start|Jump

A/T

NGS:0.022

C90:0.000

0.022
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.95_97delGTTp.Cys32deldisruptive inframe deletionMODERATEcontig1212835800

IGV:Start|Jump

ATGT/A

NGS:0.118

C90:0.311

0.118
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
aPT1

UNIPROT

c.715G>Cp.Ala239Promissense variantMODERATEcontig1212841350

IGV:Start|Jump

G/C

NGS:0.004

C90:0.000

0.004
aPT1

UNIPROT

c.727G>Tp.Glu243*stop gainedHIGHcontig1212841362

IGV:Start|Jump

G/T

NGS:0.127

C90:0.100

0.127
aPT1

UNIPROT

c.958G>Ap.Gly320Sermissense variantMODERATEcontig1212842731

IGV:Start|Jump

G/A

NGS:0.004

C90:0.000

0.004
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO USO31:
# Relative Genetic Distance
1 RSP10983-USO 31 4.51
2 RSP10981-USO 31 4.75
3 RSP10658-Lovrin 4.87
4 RSP10665-Santhica 27 4.96
5 RSP10056-Santhica27 5.32
6 RSP11046-Santhica27 5.59
7 RSP10667-Tygra 5.67
8 RSP11047-Santhica27 5.79
9 RSP10241-Monoica 5.85
10 RSP10661-Fedora 17 5.88
11 RSP10664-Futura 75 5.93
12 RSP11203-Fedora 17 5.93
13 RSP11204-Carmagnola USO 31 5.99
14 RSP10668-Ivory 6.38
15 RSP10235-Diana 6.41
16 RSP11207-Carmaleonte 6.42
17 RSP10659-Tisza 6.62
18 RSP11053-KYRG-21 6.88
19 RSP10978-Carmagnola 6.89
20 RSP10976-Carmagnola 6.93
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP10981-USO 31 4.96
2 RSP10658-Lovrin 5.28
3 RSP10241-Monoica 5.68
4 RSP10667-Tygra 5.85
5 RSP11047-Santhica27 5.88
6 RSP10664-Futura 75 5.91
7 RSP10661-Fedora 17 5.96
8 RSP10668-Ivory 6.1
9 RSP10659-Tisza 6.72
10 RSP11044-Tisza 7.05
11 RSP10979-Carmagnola 7.29
12 RSP11037-Carmagnola 7.49
13 RSP11054-Kyrgyz Gold 7.59
14 RSP11051-KYRG-11 7.7
15 RSP10653-Jiangji 7.83
16 RSP10890-Feral 7.9
17 RSP11121-RKM-2018-029 9.37
18 RSP10997-Kimbo Slice 9.69
19 RSP10755-Recon 9.7
20 RSP11126-RKM-2018-034 9.75
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4450090 123 88
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495194 11 10

Blockchain Registration Information:

Transaction ID: 3a666144f2508230dd6174634d65a30b35988ca82942d9c0401a4b90b09289eb
Stamping Certificate: PDF
SHASUM Hash: 0cd30ec577accaf5c07e0c2141ab2ee0f252ef8c4e97e75bb9205e0417de9c54