Pearadise x Fuzzy Melon #14

RSP 12969

Grower: Team Elite Genetics

General Information

Sample Name
P X FM #14 - A - 20231207
Accession Date
December 6, 2023
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.92%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0296
male female RSP12969

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

EMF1-2

UniProt

c.710A>C p.His237Pro missense variant moderate contig885 810

IGV: Start, Jump

A/C
NGS:
0.090
C90:
0.474
PHL-2 c.2564T>A p.Phe855Tyr missense variant moderate contig2621 342607

IGV: Start, Jump

T/A
NGS:
0.064
C90:
0.732
PHL-2 c.2578T>A p.Leu860Ile missense variant moderate contig2621 342621

IGV: Start, Jump

T/A
NGS:
0.068
C90:
0.746
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PHL-2 c.2830A>G p.Asn944Asp missense variant moderate contig2621 342873

IGV: Start, Jump

A/G
NGS:
0.018
C90:
0.000
PHL-2 c.2903_2905dupGCA p.Ser968dup disruptive inframe insertion moderate contig2621 342939

IGV: Start, Jump

T/TGCA
NGS:
0.018
C90:
0.522
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.885
PHL-2 c.3467A>G p.Gln1156Arg missense variant moderate contig2621 343510

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.713
PHL-2 c.3552delG p.Lys1185fs frameshift variant high contig2621 343593

IGV: Start, Jump

CG/C
NGS:
0.004
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.229G>A p.Gly77Ser missense variant moderate contig700 2724206

IGV: Start, Jump

C/T
NGS:
0.042
C90:
0.000
PKSG-4b

UniProt

c.216G>C p.Leu72Phe missense variant moderate contig700 2724219

IGV: Start, Jump

C/G
NGS:
0.044
C90:
0.000
PKSG-4b

UniProt

c.206T>C p.Leu69Ser missense variant moderate contig700 2724229

IGV: Start, Jump

A/G
NGS:
0.044
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
ELF3

UniProt

c.772A>G p.Ser258Gly missense variant moderate contig97 242478

IGV: Start, Jump

A/G
NGS:
0.112
C90:
0.000
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
ELF3

UniProt

c.1466G>A p.Ser489Asn missense variant moderate contig97 244297

IGV: Start, Jump

G/A
NGS:
0.123
C90:
0.000
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
ELF3

UniProt

c.1803_1805delTCA p.His601del disruptive inframe deletion moderate contig97 244625

IGV: Start, Jump

ACAT/A
NGS:
0.092
C90:
0.000
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
ELF3

UniProt

c.2141C>G p.Pro714Arg missense variant moderate contig97 244972

IGV: Start, Jump

C/G
NGS:
0.088
C90:
0.335
ELF3

UniProt

c.2198G>T p.Arg733Leu missense variant moderate contig97 245029

IGV: Start, Jump

G/T
NGS:
0.125
C90:
0.531
ELF5

UniProt

c.802_804delCCT p.Pro268del conservative inframe deletion moderate contig382 880654

IGV: Start, Jump

GCCT/G
NGS:
0.000
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.116
C90:
0.000
AAE1-2

UniProt

c.1541T>C p.Val514Ala missense variant moderate contig81 210503

IGV: Start, Jump

T/C
NGS:
0.050
C90:
0.000
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
HDS-1

UniProt

c.1475C>A p.Pro492Gln missense variant moderate contig1891 886162

IGV: Start, Jump

G/T
NGS:
0.011
C90:
0.000
HDS-1

UniProt

c.1393G>A p.Ala465Thr missense variant & splice region variant moderate contig1891 886355

IGV: Start, Jump

C/T
NGS:
0.009
C90:
0.091
HDS-1

UniProt

c.1381G>A p.Asp461Asn missense variant moderate contig1891 886367

IGV: Start, Jump

C/T
NGS:
0.029
C90:
0.000
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
HDS-1

UniProt

c.136G>A p.Val46Ile missense variant moderate contig1891 889256

IGV: Start, Jump

C/T
NGS:
0.088
C90:
0.593
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943
HDS-1

UniProt

c.35G>A p.Cys12Tyr missense variant moderate contig1891 889357

IGV: Start, Jump

C/T
NGS:
0.094
C90:
0.646
FT

UniProt

c.240C>G p.Asn80Lys missense variant moderate contig1561 3124664

IGV: Start, Jump

C/G
NGS:
0.075
C90:
0.000
PIE1-1

UniProt

c.1222C>G p.Gln408Glu missense variant moderate contig1225 2281482

IGV: Start, Jump

C/G
NGS:
0.096
C90:
0.852
PIE1-1

UniProt

c.6725C>T p.Ala2242Val missense variant moderate contig1225 2289290

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.737
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.121
C90:
0.000
PKSB-3

UniProt

c.1901C>G p.Ala634Gly missense variant moderate contig93 3340008

IGV: Start, Jump

C/G
NGS:
0.059
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.217 Styrofoam Cup x Fuzzy Melon 11 (RSP12983)
  2. 0.232 Mexican Flan x Audios mother fu ker (RSP12906)
  3. 0.233 Blue Dream (RSP11006)
  4. 0.238 Blue Dream (RSP11010)
  5. 0.238 Styrofoam Cup x Fuzzy Melon 1 (RSP12977)
  6. 0.239 JL x NSPM1 2 (RSP11480)
  7. 0.242 Super Blue Dream (RSP11011)
  8. 0.249 Blue Dream (RSP11004)
  9. 0.250 Blue Dream (RSP11009)
  10. 0.250 A15 (RSP12655)
  11. 0.253 Blue Dream (RSP11008)
  12. 0.254 JL x NSPM1 1 5 (RSP11479)
  13. 0.254 SHERBERT (RSP11355)
  14. 0.254 Peach Cresendo (RSP12483)
  15. 0.254 Snoops Dream (RSP11003)
  16. 0.257 Blue Dream (RSP11017)
  17. 0.257 UnObtanium (RSP11611)
  18. 0.259 Domnesia (RSP11184)
  19. 0.261 Blue Dream (RSP11012)
  20. 0.262 JL Cross 7 (RSP11508)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.270 Hermaphrodite ResearchSample2 (RSP11050)
  2. 0.270 CST (RSP11002)
  3. 0.273 Golden Goat 2 (RSP10991)
  4. 0.275 Gold Cracker (RSP11048)
  5. 0.276 Blue Dream (RSP11033)
  6. 0.279 Hermaphrodite Research Sample1 (RSP11049)
  7. 0.279 UP Sunrise (RSP10989)
  8. 0.282 RKM-2018-034 (RSP11126)
  9. 0.284 RKM-2018-004 (RSP11096)
  10. 0.288 Skywalker OG (RSP10837)
  11. 0.291 Italian Kiss (RSP11034)
  12. 0.292 RKM-2018-032 (RSP11124)
  13. 0.293 Blueberry Cheesecake (RSP10680)
  14. 0.295 Sour Raspberry (RSP10551)
  15. 0.298 Blueberry Cheesecake (RSP10684)
  16. 0.299 The Gift (RSP10988)
  17. 0.302 Liberty Haze (RSP11000)
  18. 0.306 RKM-2018-027 (RSP11119)
  19. 0.306 Kimbo Slice (RSP10997)
  20. 0.307 RKM-2018-002 (RSP11093)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.472 Cherry Blossom (RSP11311)
  2. 0.470 Cherry Blossom (RSP11328)
  3. 0.469 Cherry Blossom (RSP11314)
  4. 0.463 Cherry Blossom (RSP11323)
  5. 0.461 Cherry Blossom (RSP11333)
  6. 0.459 Cherry Blossom (RSP11317)
  7. 0.459 Northern Skunk (RSP11456)
  8. 0.458 Cherry Blossom (RSP11309)
  9. 0.455 Cherry Blossom (RSP11324)
  10. 0.450 CS (RSP11208)
  11. 0.446 Cherry Blossom (RSP11334)
  12. 0.445 Carmaleonte (RSP11207)
  13. 0.443 Unknown- Cherry Wine - 003 (RSP11270)
  14. 0.438 Cherry Blossom (RSP11300)
  15. 0.438 Cherry Blossom (RSP11318)
  16. 0.435 Feral (RSP11205)
  17. 0.433 Cherry Blossom (RSP11312)
  18. 0.431 XBL1 (SRR14708207)
  19. 0.431 Candy Kush (RSP11492)
  20. 0.431 Carmagnola (RSP11202)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.443 Cbot-2019-005 (RSP11133)
  2. 0.408 USO 31 (RSP10981)
  3. 0.406 Santhica27 (RSP11047)
  4. 0.405 Cherry (RSP11142)
  5. 0.405 Kush Hemp E1 (RSP11128)
  6. 0.405 Feral (RSP10890)
  7. 0.401 Monoica (RSP10241)
  8. 0.398 Carmagnola (RSP11037)
  9. 0.396 Carmagnola (RSP10979)
  10. 0.396 Futura 75 (RSP10664)
  11. 0.393 Fedora 17 (RSP10661)
  12. 0.393 KYRG-11 (RSP11051)
  13. 0.388 Tisza (RSP11044)
  14. 0.385 Lovrin (RSP10658)
  15. 0.381 Cherry (RSP11143)
  16. 0.374 Ivory (RSP10668)
  17. 0.373 Kyrgyz Gold (RSP11054)
  18. 0.370 Black Beauty (RSP11035)
  19. 0.370 Tisza (RSP10659)
  20. 0.370 Tygra (RSP10667)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448355
Overlapping SNPs:
93
Concordance:
58

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
9f438995b959659582caa04ea9fe8221033e465b98e7f237d154b8d6656afba4
Stamping Certificate
Download PDF (39.3 KB)
SHASUM Hash
5542c8e3e75e0be7cfa9b4e638ce8fc910e7c53a816611d6579542af144819ab
QR code for RSP12969

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