Advanced Strain Search

Jamaican Lion

RSP 12919

Grower: kevin McKernan

General Information

Sample Name
JL-Male-Stem
Accession Date
September 14, 2023
Reported Plant Sex
Male
Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.18%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0581
male female RSP12919

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
GPPs1

UniProt

c.208A>G p.Thr70Ala missense variant moderate contig676 168457

IGV: Start, Jump

A/G
NGS:
0.000
C90:
0.000
EMF1-2

UniProt

c.634G>C p.Val212Leu missense variant moderate contig885 734

IGV: Start, Jump

G/C
NGS:
0.015
C90:
0.239
PHL-2 c.1057A>G p.Arg353Gly missense variant moderate contig2621 340335

IGV: Start, Jump

A/G
NGS:
0.096
C90:
0.555
PHL-2 c.3033T>G p.Cys1011Trp missense variant moderate contig2621 343076

IGV: Start, Jump

T/G
NGS:
0.055
C90:
0.292
PHL-2 c.3202A>C p.Thr1068Pro missense variant moderate contig2621 343245

IGV: Start, Jump

A/C
NGS:
0.053
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.492G>C p.Glu164Asp missense variant moderate contig700 2721181

IGV: Start, Jump

C/G
NGS:
0.048
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.070
C90:
0.689
PKSG-4b

UniProt

c.229G>A p.Gly77Ser missense variant moderate contig700 2724206

IGV: Start, Jump

C/T
NGS:
0.042
C90:
0.000
PKSG-4b

UniProt

c.216G>C p.Leu72Phe missense variant moderate contig700 2724219

IGV: Start, Jump

C/G
NGS:
0.044
C90:
0.000
PKSG-4b

UniProt

c.206T>C p.Leu69Ser missense variant moderate contig700 2724229

IGV: Start, Jump

A/G
NGS:
0.044
C90:
0.000
DXR-1

UniProt

c.139A>G p.Arg47Gly missense variant moderate contig380 235296

IGV: Start, Jump

T/C
NGS:
0.020
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
FAD2-2

UniProt

c.248C>G p.Pro83Arg missense variant moderate contig83 1803121

IGV: Start, Jump

G/C
NGS:
0.004
C90:
0.000
FAD2-2

UniProt

c.190C>T p.His64Tyr missense variant moderate contig83 1803179

IGV: Start, Jump

G/A
NGS:
0.013
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
FAD2-2

UniProt

c.62C>T p.Pro21Leu missense variant moderate contig83 1803307

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
FAD2-2

UniProt

c.23G>A p.Ser8Asn missense variant moderate contig83 1803346

IGV: Start, Jump

C/T
NGS:
0.009
C90:
0.000
ELF3

UniProt

c.520A>C p.Asn174His missense variant moderate contig97 242226

IGV: Start, Jump

A/C
NGS:
0.094
C90:
0.502
ELF3

UniProt

c.752G>T p.Gly251Val missense variant moderate contig97 242458

IGV: Start, Jump

G/T
NGS:
0.022
C90:
0.139
ELF3

UniProt

c.772A>G p.Ser258Gly missense variant moderate contig97 242478

IGV: Start, Jump

A/G
NGS:
0.112
C90:
0.000
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
ELF3

UniProt

c.1230-2_1230-1delAG splice acceptor variant & intron variant high contig97 243676

IGV: Start, Jump

TAG/T
NGS:
0.088
C90:
0.450
ELF3

UniProt

c.1466G>A p.Ser489Asn missense variant moderate contig97 244297

IGV: Start, Jump

G/A
NGS:
0.123
C90:
0.000
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
ELF3

UniProt

c.2198G>T p.Arg733Leu missense variant moderate contig97 245029

IGV: Start, Jump

G/T
NGS:
0.125
C90:
0.531
ELF5

UniProt

c.853C>T p.Pro285Ser missense variant moderate contig382 880715

IGV: Start, Jump

C/T
NGS:
0.007
C90:
0.153
aPT4

UniProt

c.202T>A p.Leu68Ile missense variant moderate contig121 2828858

IGV: Start, Jump

T/A
NGS:
0.068
C90:
0.000
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.116
C90:
0.000
PHL-1

UniProt

c.2651C>T p.Ala884Val missense variant moderate contig1439 1487146

IGV: Start, Jump

G/A
NGS:
0.044
C90:
0.622
PHL-1

UniProt

c.2623A>G p.Thr875Ala missense variant moderate contig1439 1487174

IGV: Start, Jump

T/C
NGS:
0.123
C90:
0.000
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943
PIE1-2

UniProt

c.5932A>G p.Ile1978Val missense variant moderate contig1460 1185552

IGV: Start, Jump

T/C
NGS:
0.061
C90:
0.268
EMF1-1

UniProt

c.470C>A p.Ser157Tyr missense variant moderate contig883 269959

IGV: Start, Jump

C/A
NGS:
0.013
C90:
0.239
AAE1-3

UniProt

c.634G>C p.Gly212Arg missense variant moderate contig976 1083220

IGV: Start, Jump

C/G
NGS:
0.116
C90:
0.000
AAE1-3

UniProt

c.475G>A p.Gly159Arg missense variant moderate contig976 1083550

IGV: Start, Jump

C/T
NGS:
0.048
C90:
0.000
AAE1-3

UniProt

c.416T>C p.Leu139Pro missense variant moderate contig976 1083609

IGV: Start, Jump

A/G
NGS:
0.061
C90:
0.000
AAE1-3

UniProt

c.382T>C p.Tyr128His missense variant moderate contig976 1083643

IGV: Start, Jump

A/G
NGS:
0.072
C90:
0.000
AAE1-3

UniProt

c.296C>T p.Pro99Leu missense variant moderate contig976 1083729

IGV: Start, Jump

G/A
NGS:
0.046
C90:
0.000
AAE1-3

UniProt

c.293A>G p.Asp98Gly missense variant moderate contig976 1083732

IGV: Start, Jump

T/C
NGS:
0.068
C90:
0.000
AAE1-3

UniProt

c.284A>T p.Glu95Val missense variant moderate contig976 1083741

IGV: Start, Jump

T/A
NGS:
0.053
C90:
0.000
AAE1-3

UniProt

c.199A>G p.Asn67Asp missense variant moderate contig976 1083876

IGV: Start, Jump

T/C
NGS:
0.079
C90:
0.000
AAE1-3

UniProt

c.188A>G p.Asn63Ser missense variant moderate contig976 1083887

IGV: Start, Jump

T/C
NGS:
0.077
C90:
0.000
AAE1-3

UniProt

c.181G>A p.Val61Ile missense variant moderate contig976 1083894

IGV: Start, Jump

C/T
NGS:
0.055
C90:
0.000
AAE1-3

UniProt

c.167A>G p.Glu56Gly missense variant moderate contig976 1083908

IGV: Start, Jump

T/C
NGS:
0.070
C90:
0.000
AAE1-3

UniProt

c.79A>G p.Thr27Ala missense variant moderate contig976 1083996

IGV: Start, Jump

T/C
NGS:
0.068
C90:
0.000
PIE1-1

UniProt

c.1222C>G p.Gln408Glu missense variant moderate contig1225 2281482

IGV: Start, Jump

C/G
NGS:
0.096
C90:
0.852
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.121
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.046 Jamaican Lion (RSP12918)
  2. 0.053 Jamaican Lion (RSP12920)
  3. 0.217 Jamaican Lion (RSP12913)
  4. 0.220 JL 4th Gen 2 (RSP11194)
  5. 0.223 JL 4th Gen 1 (RSP11193)
  6. 0.230 JL 4th Gen 5 (RSP11199)
  7. 0.233 JL 3rd Gen Mother (RSP11214)
  8. 0.233 JL 4th Gen 4 (RSP11198)
  9. 0.238 JL 2 (RSP11076)
  10. 0.239 JL yellow (RSP11075)
  11. 0.241 JL 3rd Gen Father (RSP11196)
  12. 0.243 Jamaican Lion (RSP12915)
  13. 0.244 JL 4th Gen 7 (RSP11153)
  14. 0.245 Blueberry Cheesecake (RSP10672)
  15. 0.249 Blueberry Cheesecake (RSP10671)
  16. 0.249 Blueberry Cheesecake (RSP10670)
  17. 0.254 JL 3rd Gen Mother (RSP11197)
  18. 0.254 JL 4th Gen 3 (RSP11195)
  19. 0.255 Jamaican Lion (RSP12917)
  20. 0.269 BlueBerry Cheesecake x JL Male (RSP11201)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
closely related moderately related distantly related
  1. 0.241 JL yellow (RSP11075)
  2. 0.241 Blueberry Cheesecake (RSP10672)
  3. 0.282 CST (RSP11002)
  4. 0.283 RKM-2018-027 (RSP11119)
  5. 0.287 Durban Poison (RSP11014)
  6. 0.297 Recon (RSP10755)
  7. 0.314 Gold Cracker (RSP11048)
  8. 0.315 RKM-2018-023 (RSP11115)
  9. 0.322 UP Sunrise (RSP10989)
  10. 0.327 Cbot-2019-001 (RSP11129)
  11. 0.329 RKM-2018-031 (RSP11123)
  12. 0.332 Blue Dream (RSP11033)
  13. 0.332 Liberty Haze (RSP11000)
  14. 0.334 Kimbo Slice (RSP10997)
  15. 0.336 KYRG-11 (RSP11051)
  16. 0.336 Hermaphrodite ResearchSample2 (RSP11050)
  17. 0.338 Tisza (RSP10659)
  18. 0.338 Tygra (RSP10667)
  19. 0.339 Cherry (RSP11142)
  20. 0.339 Ivory (RSP10668)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.470 Cherry Blossom (RSP11323)
  2. 0.469 JL Cross 11 (RSP11512)
  3. 0.449 Chem 91 (RSP11185)
  4. 0.445 Cherry Blossom (RSP11318)
  5. 0.440 Cherry Blossom (RSP11306)
  6. 0.437 JL Cross 13 (RSP11514)
  7. 0.436 Cherry Blossom (RSP11329)
  8. 0.434 Cherry Blossom CBG (RSP11303)
  9. 0.433 Motor Breath 15 (RSP12093)
  10. 0.433 C Temple (RSP11643)
  11. 0.432 GG4 (RSP11978)
  12. 0.431 Cherry Blossom (RSP11312)
  13. 0.429 CS (RSP11208)
  14. 0.428 Super Sour Diesel (RSP11191)
  15. 0.428 Sour Tsunami x Cataract Ku (RSP11183)
  16. 0.427 GG 4 (RSP11461)
  17. 0.425 New York City Deisel (RSP11225)
  18. 0.423 DB (RSP12936)
  19. 0.423 QQD2 (RSP11450)
  20. 0.421 RKM-2018-002 (RSP11093)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.434 RKM-2018-002 (RSP11093)
  2. 0.420 RKM-2018-028 (RSP11120)
  3. 0.414 RKM-2018-026 (RSP11118)
  4. 0.407 RKM-2018-032 (RSP11124)
  5. 0.399 Kush Hemp E1 (RSP11128)
  6. 0.397 Skywalker OG (RSP10837)
  7. 0.397 RKM-2018-009 (RSP11100)
  8. 0.394 RKM-2018-033 (RSP11125)
  9. 0.391 RKM-2018-018 (RSP11110)
  10. 0.386 Hermaphrodite Research Sample1 (RSP11049)
  11. 0.386 Blueberry Cheesecake (RSP10680)
  12. 0.384 Cbot-2019-005 (RSP11133)
  13. 0.380 Cbot-2019-004 (RSP11132)
  14. 0.379 Feral (RSP10890)
  15. 0.379 Cbot-2019-006 (RSP11134)
  16. 0.376 RKM-2018-019 (RSP11111)
  17. 0.374 Sour Raspberry (RSP10551)
  18. 0.374 Carmagnola (RSP11037)
  19. 0.373 Black Beauty (RSP11035)
  20. 0.372 Futura 75 (RSP10664)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450101
Overlapping SNPs:
37
Concordance:
22

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495202
Overlapping SNPs:
1
Concordance:
1

Blockchain Registration Information

Transaction ID
ba299a66764d00d192ba932f463f12950e1092de567ca8c6afd03c9c45b44b7f
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
acc2760ea55dfaa6c7e540a403b8c15663c5475cef8feaf0018a6f35b9e6d964
QR code for RSP12919

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